CF417487

Overview
NameCF417487
Unique NameCF417487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:118..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1
Query:    1 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 417
            LSSA+V TSFIR  P   SL+++P+   Q++FGLK+   RGGRV AMATYKVK ITP GE E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+QIGEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:    6 LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.917e-51
Identity = 98/142 (69.01%), Postives = 121/142 (85.21%), Query Frame = 1
Query:    1 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 417
            LSSA+VSTSF+R + T  SL+++P    Q++FGLK++  RGGRV AMATYKVK ITP GE+E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+Q+ EG+VLTC AYPTSDV IETHKEE +
Sbjct:    6 LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.488e-51
Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    1 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 423
            +S+ M+STSF+  KP  TSLK +PN+G+A+FGLK+  GG+V  MA+YKVKLITP G  E +CPD+ +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:    4 VSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 144          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.502e-50
Identity = 93/139 (66.91%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    1 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 417
            +S  M+STSF+  KP  TSLKA+ N+G+A+FGLK+ R GR+  MA+YKVKLITP G  E  CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G+VDQS+ +FLD+DQ   GFVLTC AYP  DVTIETHKEEEL
Sbjct:    4 ISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 94/141 (66.67%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    1 LSSAMVSTSFIRSKPTATSLKAMP-NMGQAIFGLKANRG-GRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 417
            LS A +ST+F    P  T+  A+P N+G+A+FGLK++   GRV AMA YKV L+TP G++E+ CPDD +ILDAAEEAG+DLPYSCRAG+CSSC GKV SG+V+Q + SFLDDDQI EG+VLTC AYPT DVTIETHKEEEL
Sbjct:    8 LSGATMSTAFAPKTPPMTA--ALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.080e-45
Identity = 91/140 (65.00%), Postives = 107/140 (76.43%), Query Frame = 1
Query:    1 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITP-GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 417
            LS+  VS S +  +    +     NMGQA+FGLKA   GRV AMATYKV LIT   G    +CPDD ++LD AEE G+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQI  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:    5 LSTLSVSASLLPKQQPMVASSLPTNMGQALFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.239e-43
Identity = 87/141 (61.70%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 417
            L    VSTSF+R++P   S+           GLK +  RG   VAMA+YKVKL+TP G +E  CP D +ILD AEE G+DLPYSCRAG+CSSC GKVV G VDQS+ SFLDD+QI  GFVLTC AYPTSDV IETHKEE+L
Sbjct:    7 LYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.111e-42
Identity = 85/136 (62.50%), Postives = 107/136 (78.68%), Query Frame = 1
Query:   16 VSTSFIRSKPTATSLKAMP-NMGQAIFGLKA-NRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 417
            ++T+F+        + A+P N G+++FGLK  +RGGR+  MA YKV L+TP G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQI EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:   11 MATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 86/135 (63.70%), Postives = 103/135 (76.30%), Query Frame = 1
Query:   19 STSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 423
            S+S +R+ P  T++ A+P     I G  A+   R+ A ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG+VDQS+QS+LDD QI +G+VLTC AYPTSDV IETHKEEEL G
Sbjct:   16 SSSSLRAAPAPTAV-ALPAAKVGIMGRSASSRRRLRAQATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 149          
BLAST of CF417487 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1
Query:  133 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 417
            ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS++SFLDDDQI EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CF417487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_ARATH3.682e-5473.24Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_ARATH2.917e-5169.01Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_CAPAN8.488e-5165.96Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_SOLLC5.502e-5066.91Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_MESCR7.436e-4766.67Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_SILPR4.080e-4565.00Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER1_PEA2.239e-4361.70Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER1_SPIOL1.111e-4262.50Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_MAIZE7.202e-4263.70Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER_BRANA9.407e-4283.16Ferredoxin OS=Brassica napus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-417 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417487 ID=CF417487; Name=CF417487; organism=Citrus sinensis; type=EST; length=706bp
CTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAGCAAGCCTACAGC
GACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATTTGGCCTCA
AAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACAAAGTCAAG
CTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGATGACTCGTT
TATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCA
GGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTT
GACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGTTT
TGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGACTC
ACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCATTA
TTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTTTG
AAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTATTT
CTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATCGT
ACCTAGAGGGTGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTATA
ATTAAGAGTCAAGCAAGAACAATAGATCTTTCGTTTTTATGTCAAAAAAA
AAAAAA
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