CF417490
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 325.479 bits (833), Expect = 2.229e-106 Identity = 155/170 (91.18%), Postives = 161/170 (94.71%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGF 526 MATSAIQQSAFAGQTAL+QSNE V K+G GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVL GF Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170 HSP 2 Score: 82.0333 bits (201), Expect = 2.229e-106 Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGF 227
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 3.491e-104 Identity = 154/170 (90.59%), Postives = 158/170 (92.94%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGF 526 MATSAIQQSAFAGQTAL+ NE VRK+G GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GF Sbjct: 1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGF 170 HSP 2 Score: 80.8777 bits (198), Expect = 3.491e-104 Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGF Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 227
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 7.753e-104 Identity = 152/169 (89.94%), Postives = 159/169 (94.08%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXG 523 MATSAI+QSAFAGQTAL+ NE VRK+G +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVL G Sbjct: 1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMG 169 HSP 2 Score: 80.8777 bits (198), Expect = 7.753e-104 Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGF Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 227
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 4.989e-103 Identity = 151/170 (88.82%), Postives = 156/170 (91.76%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGF 526 MAT AIQQSAF GQ + NEF+RKVG GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVL GF Sbjct: 1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGF 170 HSP 2 Score: 80.8777 bits (198), Expect = 4.989e-103 Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGF Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 227
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 3.210e-102 Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGF 526 MATSAIQQSAF G+T LRQ NEF+RK G R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVL GF Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGF 170 HSP 2 Score: 83.1889 bits (204), Expect = 3.210e-102 Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGF Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGF 227
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 310.071 bits (793), Expect = 2.695e-101 Identity = 149/169 (88.17%), Postives = 159/169 (94.08%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXG 523 MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL G Sbjct: 1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMG 168 HSP 2 Score: 80.4925 bits (197), Expect = 2.695e-101 Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGF Sbjct: 180 LGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 297.745 bits (761), Expect = 2.713e-98 Identity = 148/170 (87.06%), Postives = 156/170 (91.76%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGF 526 MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL GF Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGF 168 HSP 2 Score: 82.8037 bits (203), Expect = 2.713e-98 Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGF Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGF 225
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 297.745 bits (761), Expect = 2.713e-98 Identity = 148/170 (87.06%), Postives = 156/170 (91.76%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGF 526 MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL GF Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGF 168 HSP 2 Score: 82.8037 bits (203), Expect = 2.713e-98 Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGF Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGF 225
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 296.59 bits (758), Expect = 2.091e-95 Identity = 147/171 (85.96%), Postives = 155/171 (90.64%), Query Frame = 2 Query: 17 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXG 523 MAT SAIQ S+ AGQT LR Q NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVL G Sbjct: 1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMG 170 HSP 2 Score: 74.3294 bits (181), Expect = 2.091e-95 Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L PGGAFDPLGLADDP+ AELKVKE+KNGRLAMFSMFGF Sbjct: 182 LGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGF 228
BLAST of CF417490 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 3.579e-92 Identity = 131/140 (93.57%), Postives = 135/140 (96.43%), Query Frame = 2 Query: 107 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGF 526 +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GF Sbjct: 3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGF 142 HSP 2 Score: 80.8777 bits (198), Expect = 3.579e-92 Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 559 LVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 699 L + L YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGF Sbjct: 153 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 199 The following BLAST results are available for this feature:
BLAST of CF417490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417490 ID=CF417490; Name=CF417490; organism=Citrus sinensis; type=EST; length=699bpback to top |