CF417495

Overview
NameCF417495
Unique NameCF417495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:352..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.930e-69
Identity = 117/137 (85.40%), Postives = 127/137 (92.70%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLE+RE+GSTM+VVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL AN SPE+AA+TRIIYGGSVNGANCKEL  QPDVDGFL
Sbjct:   95 GHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFL 231

HSP 2 Score: 41.9726 bits (97), Expect = 1.930e-69
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAELK*NS 482
            F VGGASLKPEFIDIIK+AE+K N+
Sbjct:  230 FLVGGASLKPEFIDIIKAAEVKRNA 254
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 1.129e-66
Identity = 114/137 (83.21%), Postives = 125/137 (91.24%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR ILNE +EFVGDKVAYAL+QGLKVIACVGETLE+REAGSTM+VVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  N S ++AA TRIIYGGSVNG NCKEL  Q DVDGFL
Sbjct:   95 GHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFL 231

HSP 2 Score: 40.817 bits (94), Expect = 1.129e-66
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAELK 473
            F VGGASLKPEFIDIIK+AE+K
Sbjct:  230 FLVGGASLKPEFIDIIKAAEVK 251
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.276e-66
Identity = 113/137 (82.48%), Postives = 124/137 (90.51%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR +LNE NEFVGDKVAYALSQGLKVIACVGETLEQREAG+TMEVVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW   N S E++A+TRIIYGGSV+G+NCKEL  Q DVDGFL
Sbjct:   36 GHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFL 172

HSP 2 Score: 40.817 bits (94), Expect = 3.276e-66
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAELK 473
            F VGGASLKPEFIDIIK+AE+K
Sbjct:  171 FLVGGASLKPEFIDIIKAAEVK 192
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 1.606e-65
Identity = 114/137 (83.21%), Postives = 123/137 (89.78%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQREAGSTM+VVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV  ANCKELAAQPDVDGFL
Sbjct:   95 GHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFL 231

HSP 2 Score: 36.5798 bits (83), Expect = 1.606e-65
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAELK 473
            F VGGASLKPEFIDII +A +K
Sbjct:  230 FLVGGASLKPEFIDIINAATVK 251
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 4.643e-65
Identity = 111/137 (81.02%), Postives = 123/137 (89.78%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR +LNE NEFVGDK AYALSQGLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW+  N   ++A + RIIYGGSVNGAN KELA QPD+DGFL
Sbjct:   95 GHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFL 231

HSP 2 Score: 39.2762 bits (90), Expect = 4.643e-65
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAELK 473
            F VGGASLKPEF+DIIKSA +K
Sbjct:  230 FLVGGASLKPEFVDIIKSATVK 251
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 1.342e-64
Identity = 112/137 (81.75%), Postives = 124/137 (90.51%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQRE+GSTM+VVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKWL AN S E+A +TRIIYGGSV GANCKELAA+PDVDGFL
Sbjct:   95 GHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFL 231

HSP 2 Score: 37.7354 bits (86), Expect = 1.342e-64
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAELK 473
            F VGGASLKPEFIDII SA +K
Sbjct:  230 FLVGGASLKPEFIDIINSATVK 251
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 2.488e-63
Identity = 110/137 (80.29%), Postives = 123/137 (89.78%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTMEVVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQPDVDGFL
Sbjct:   95 GHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFL 231

HSP 2 Score: 36.5798 bits (83), Expect = 2.488e-63
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAELK 473
            F VGGASLKPEFIDII +A +K
Sbjct:  230 FLVGGASLKPEFIDIINAATVK 251
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 7.835e-62
Identity = 110/137 (80.29%), Postives = 120/137 (87.59%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTMEVVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQ DVDGFL
Sbjct:   95 GHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFL 231

HSP 2 Score: 36.5798 bits (83), Expect = 7.835e-62
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAELK 473
            F VGGASLKPEFIDII +A +K
Sbjct:  230 FLVGGASLKPEFIDIINAAAVK 251
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.849e-52
Identity = 94/137 (68.61%), Postives = 109/137 (79.56%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR +  E +E +G KVA+ALS+GL VIAC+GE L++REAG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFL
Sbjct:   94 GHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFL 230

HSP 2 Score: 33.113 bits (74), Expect = 2.849e-52
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAE 467
            F VGGASLKPEF+DII + +
Sbjct:  229 FLVGGASLKPEFVDIINAKQ 248
[Close]
BLAST of CF417495 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.715e-52
Identity = 92/137 (67.15%), Postives = 110/137 (80.29%), Query Frame = 2 
Query:    2 GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 412
            GHSERR I  E +E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK A+P QAQEVH  LRKW   N S +++AA RI YGGSV  ANC+ELAA+PD+DGFL
Sbjct:   93 GHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFL 229

HSP 2 Score: 30.8018 bits (68), Expect = 3.715e-52
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  408 FWVGGASLKPEFIDIIKSAE 467
            F VGGASLKPEFI I+ + +
Sbjct:  228 FLVGGASLKPEFIQIVNARQ 247
The following BLAST results are available for this feature:
BLAST of CF417495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY1.930e-6985.40Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH1.129e-6683.21Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_LACSA3.276e-6682.48Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_MAIZE1.606e-6583.21Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_COPJA4.643e-6581.02Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYSJ1.342e-6481.75Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE2.488e-6380.29Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU7.835e-6280.29Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_RABIT2.849e-5268.61Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_CULTA3.715e-5267.15Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-425 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417495 ID=CF417495; Name=CF417495; organism=Citrus sinensis; type=EST; length=636bp
TGGTCATTCTGAAAGGAGACTCATTTTGAATGAATTAAATGAGTTTGTTG
GGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGT
GTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGAAGTTGT
TGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACA
TTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCC
ACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTCT
TGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAG
GATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTT
GACGGATTTTTGGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACA
TCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATTTCAAGCG
CAGTTTGCTGATGAAGTATTTACTGTTTGTGGATATATAGAATACGTTTG
GTATAATTTCAGAATTACTTTTGTTTTTGATAAGCGCGACCAACTGAAAC
CTTTTTTTAAACTTTTTTAATTATCTTTGTTTCCTA
back to top