CF417536

Overview
NameCF417536
Unique NameCF417536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1389 contig Csv1_Contig1389:223..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417536 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   76 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 363
            ++AK P+AT  +R  L VV  + S    ++ +    K++SS+  RR+L+F                E EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
[Close]
BLAST of CF417536 vs. ExPASy Swiss-Prot
Match: PST2_GOSHI (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   64 LLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 363
            L  T++ K       +R  L+V   A  ++ E+V M  + K E + NGRRE++F                 + EPKRG+ +AKK YAPVCVTMPTARICR
Sbjct:   11 LSTTNLTKGSPRITQRR--LVVANAAKGAQVESVQMSGERKTEGN-NGRREMMFAAAAAAICSVAGVA---TAEPKRGSAEAKKAYAPVCVTMPTARICR 104
The following BLAST results are available for this feature:
BLAST of CF417536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PST2_ARATH4.923e-1243.75Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
PST2_GOSHI7.109e-1141.00Photosystem II 5 kDa protein, chloroplastic OS=Gos... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-466 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417536 ID=CF417536; Name=CF417536; organism=Citrus sinensis; type=EST; length=500bp
GAGAAATCACTTGCAACAAAGTCAGCAGCAAACATGGCTTCGATGACCAT
GGCAGCAGCCTCATTACTGCCCACAAGCATGGCCAAAAACCCAGCAGCAA
CAAGAGCGAAGAGAGGAGGCCTCATCGTTGTGGCCAAGGCTGCATCATCA
AAAGCTGAAAATGTGAGCATGGAATTCAAGAACAAGGATGAGAGCAGCAG
CAACGGAAGAAGGGAGCTTGTGTTTGCAGCAGCAGCTGCAGCAGCTTGCT
CCATTGCAAAAGTTGCAATGGCTGAATCTGAGGAGCCCAAACGAGGGACC
CCAGATGCTAAGAAGAAGTATGCTCCTGTTTGTGTCACAATGCCTACTGC
TAGAATCTGTCGCAAGTGAGAATGTTTTTTAATTTTCATGCTGTTGATGT
TAATTAGTGTCCAATTAATTGATATGAGATCAATGTTAAAAGCTGTGAGC
ATCTGTATCTTGTAATTGGAGAATCCTGTTTATTTTATCTTGTCTTTGTT
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