CF417542
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 3.911e-52 Identity = 98/198 (49.49%), Postives = 137/198 (69.19%), Query Frame = 2 Query: 2 VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG-IAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLH 592 VY N++I+ +TILAP SPNTDGI+PDS +N IED YI +GDD VAVKSGWDEYGIAYG P+ + IRR+T SP+S IA+GSE SGG+++V AE I N GI +KT IGRGG++++I V + M+ + + G+ G H D+ ++P A PV+ GI +D+ V + ++G+ + PFTGIC+SN+ +H Sbjct: 228 VYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIH 425
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.364e-19 Identity = 63/201 (31.34%), Postives = 96/201 (47.76%), Query Frame = 2 Query: 8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINLHG 595 CSNV + V + APADSPNTDGI ++ N+ + +S I TGDD ++++SG S + I +T P GI++GS + V V + L G+ +KT G G NI ++ M+N + I I D D +A+ V N + +D+ GT ++ + KN P GI L +N+ G Sbjct: 223 CSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG-----------SQNVQINDIT-CGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSAVQVKN-VVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNIKG 410
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.166e-18 Identity = 65/197 (32.99%), Postives = 94/197 (47.72%), Query Frame = 2 Query: 8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGH--PSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNI-GRGGFIRNITVSDVYMENARKGIKIAG----DVGDHPD--DKFNP----NALPVVNGITIKDV-WGTKVQQSGLIQGLKNSP 556 C ++ TI+AP DSPNTDG +P+S NV I S GDD +AVK+G H + GIT+R G+ +GSE SGGV +V E ++ G+ +KT GG + NIT+ V ++ + + D H D NP + P V+GIT++DV +G+ GL + P Sbjct: 53 CEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDVEIRNLAHAAGVFLGLPDVP 249
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16 Identity = 60/199 (30.15%), Postives = 92/199 (46.23%), Query Frame = 2 Query: 8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINL 589 C NV + + +PADSPNTDGI + N+ I+DS + TGDD +++ SG + ++GIT P GI++GS + V NV+ L G+ +KT G G +NI D+ M+N I I D D + + V+ + K++ GT + + KN P GI + N+ L Sbjct: 224 CKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENV------RATGIT------CGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKL 410
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15 Identity = 61/181 (33.70%), Postives = 87/181 (48.07%), Query Frame = 2 Query: 8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGG----VENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAG--DVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL 532 C+ V I + I AP SPNTDGID +SSNV I+D I+TGDD +A+ SG I SGI P GI++GS G VENV ++ N G +KT G G+ R IT + + ++N I I + GD + K ++ V+ + + GT + G+ Sbjct: 169 CNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHI------SGI------DCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGV 337
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14 Identity = 65/204 (31.86%), Postives = 93/204 (45.59%), Query Frame = 2 Query: 8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNS-PFTGICLSNINLHGVAG 604 C V I+ + I AP DSPNTDGID +S IE I TGDD +A+ +G SS ITI+ + P GI++GS + V +V + G+ +KT G G IT +V M N+ I I N + + G+T K++ GT + + +S P TGI LSN++L +G Sbjct: 214 CEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLI-CGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSG 405
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR1_RALSO (Polygalacturonase OS=Ralstonia solanacearum GN=pglA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14 Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 2 Query: 35 TILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF---SGIAVGSETSGGVENV----LAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARK 406 T P NTDG DP S+NV + +SYISTGDD VA+K+ S G T + + F G+++GSET GGV N+ LA N + G G+ +K++I RGG + NI + + M N ++ Sbjct: 275 TCFTPETVKNTDGFDPGQSTNVVLANSYISTGDDHVAIKA------------SGGATRNLLFAHNHFYYGHGLSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKE 393
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.520e-14 Identity = 57/204 (27.94%), Postives = 90/204 (44.12%), Query Frame = 2 Query: 8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINLHGVAG 604 C +V+ + + AP SPNTDGI + + + +S I TGDD ++++SG S + I P GI++GS + V VL + NL++ G+ +KT G G +NI ++ M N I I D D + V+ + ++ GT + + K+SP G + NINL G G Sbjct: 237 CQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESG------------SKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGG 428
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14 Identity = 59/204 (28.92%), Postives = 91/204 (44.61%), Query Frame = 2 Query: 8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGG----VENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINLHGVAG 604 C+NVV + I A A SPNTDG+ ++ + I D+ I TGDD +++ SG S + +T P GI++GS SG V NV + G+ +KT G G NI +V M++ + I I + D + + V + +++ GT + + N P GI + NINL G +G Sbjct: 229 CTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSG-----------SQNVQATNIT-CGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESG 420
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13 Identity = 56/201 (27.86%), Postives = 92/201 (45.77%), Query Frame = 2 Query: 8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINLHG 595 C+ V + V I AP DSPNTDGI ++ N+ + +S I TGDD ++++ G + + I +T P GI++GS + V + + G+ +KT G G +NI ++ MEN + I I D D + +A+ V N + K++ GT + + + P GI L N+ + G Sbjct: 223 CNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG-----------TQNLQIFDLT-CGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDYCDKDKCEDQESAVQVKN-VVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKIKG 410 The following BLAST results are available for this feature:
BLAST of CF417542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417542 ID=CF417542; Name=CF417542; organism=Citrus sinensis; type=EST; length=658bpback to top |