CF417542

Overview
NameCF417542
Unique NameCF417542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1417 contig Csv1_Contig1417:58..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.911e-52
Identity = 98/198 (49.49%), Postives = 137/198 (69.19%), Query Frame = 2
Query:    2 VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG-IAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLH 592
            VY  N++I+ +TILAP  SPNTDGI+PDS +N  IED YI +GDD VAVKSGWDEYGIAYG P+  + IRR+T  SP+S  IA+GSE SGG+++V AE I   N   GI +KT IGRGG++++I V  + M+  +    + G+ G H D+ ++P A PV+ GI  +D+    V  +  ++G+ + PFTGIC+SN+ +H
Sbjct:  228 VYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIH 425          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.364e-19
Identity = 63/201 (31.34%), Postives = 96/201 (47.76%), Query Frame = 2
Query:    8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINLHG 595
            CSNV +  V + APADSPNTDGI   ++ N+ + +S I TGDD ++++SG           S  + I  +T   P  GI++GS     +   V  V  +   L     G+ +KT  G  G   NI   ++ M+N +  I I  D  D        +A+ V N +  +D+ GT   ++ +     KN P  GI L  +N+ G
Sbjct:  223 CSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG-----------SQNVQINDIT-CGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSAVQVKN-VVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNIKG 410          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.166e-18
Identity = 65/197 (32.99%), Postives = 94/197 (47.72%), Query Frame = 2
Query:    8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGH--PSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNI-GRGGFIRNITVSDVYMENARKGIKIAG----DVGDHPD--DKFNP----NALPVVNGITIKDV-WGTKVQQSGLIQGLKNSP 556
            C ++     TI+AP DSPNTDG +P+S  NV I     S GDD +AVK+G         H   + GIT+R         G+ +GSE SGGV +V  E  ++     G+ +KT     GG + NIT+  V ++  +  +        D   H D     NP    +  P V+GIT++DV        +G+  GL + P
Sbjct:   53 CEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDVEIRNLAHAAGVFLGLPDVP 249          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 60/199 (30.15%), Postives = 92/199 (46.23%), Query Frame = 2
Query:    8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINL 589
            C NV    + + +PADSPNTDGI    + N+ I+DS + TGDD +++ SG +         ++GIT        P  GI++GS     +   V NV+     L     G+ +KT  G  G  +NI   D+ M+N    I I  D  D  +      +   V+ +  K++ GT  +   +     KN P  GI + N+ L
Sbjct:  224 CKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENV------RATGIT------CGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKL 410          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 61/181 (33.70%), Postives = 87/181 (48.07%), Query Frame = 2
Query:    8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGG----VENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAG--DVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL 532
            C+ V I  + I AP  SPNTDGID  +SSNV I+D  I+TGDD +A+ SG     I      SGI         P  GI++GS    G    VENV  ++ N      G  +KT  G  G+ R IT + + ++N    I I    + GD  + K   ++   V+ +   +  GT   + G+
Sbjct:  169 CNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHI------SGI------DCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGV 337          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 65/204 (31.86%), Postives = 93/204 (45.59%), Query Frame = 2
Query:    8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNS-PFTGICLSNINLHGVAG 604
            C  V I+ + I AP DSPNTDGID  +S    IE   I TGDD +A+ +G           SS ITI+ +    P  GI++GS     +   V +V        +   G+ +KT  G  G    IT  +V M N+   I I            N  +   + G+T K++ GT    + +     +S P TGI LSN++L   +G
Sbjct:  214 CEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLI-CGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSG 405          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR1_RALSO (Polygalacturonase OS=Ralstonia solanacearum GN=pglA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 2
Query:   35 TILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF---SGIAVGSETSGGVENV----LAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARK 406
            T   P    NTDG DP  S+NV + +SYISTGDD VA+K+            S G T   +   + F    G+++GSET GGV N+    LA   N  + G G+ +K++I RGG + NI  + + M N ++
Sbjct:  275 TCFTPETVKNTDGFDPGQSTNVVLANSYISTGDDHVAIKA------------SGGATRNLLFAHNHFYYGHGLSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKE 393          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.520e-14
Identity = 57/204 (27.94%), Postives = 90/204 (44.12%), Query Frame = 2
Query:    8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINLHGVAG 604
            C +V+   + + AP  SPNTDGI    +  + + +S I TGDD ++++SG            S + I       P  GI++GS     +   V  VL +  NL++   G+ +KT  G  G  +NI   ++ M N    I I     D  D      +   V+ +   ++ GT   +  +     K+SP  G  + NINL G  G
Sbjct:  237 CQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESG------------SKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGG 428          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 59/204 (28.92%), Postives = 91/204 (44.61%), Query Frame = 2
Query:    8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGG----VENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINLHGVAG 604
            C+NVV   + I A A SPNTDG+   ++  + I D+ I TGDD +++ SG           S  +    +T   P  GI++GS  SG     V NV      +     G+ +KT  G  G   NI   +V M++ +  I I  +  D  +      +   V  +  +++ GT   +  +      N P  GI + NINL G +G
Sbjct:  229 CTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSG-----------SQNVQATNIT-CGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESG 420          
BLAST of CF417542 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13
Identity = 56/201 (27.86%), Postives = 92/201 (45.77%), Query Frame = 2
Query:    8 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGL-IQGLKNSPFTGICLSNINLHG 595
            C+ V +  V I AP DSPNTDGI   ++ N+ + +S I TGDD ++++ G           +  + I  +T   P  GI++GS     +   V  +  +         G+ +KT  G  G  +NI   ++ MEN +  I I  D  D    +   +A+ V N +  K++ GT      + +   +  P  GI L N+ + G
Sbjct:  223 CNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG-----------TQNLQIFDLT-CGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDYCDKDKCEDQESAVQVKN-VVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKIKG 410          
The following BLAST results are available for this feature:
BLAST of CF417542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PGLR_VITVI3.911e-5249.49Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
ADPG2_ARATH4.364e-1931.34Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR_RHIRD2.166e-1832.99Polygalacturonase OS=Rhizobium radiobacter GN=pgl ... [more]
QRT2_ARATH1.552e-1630.15Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=... [more]
PGLR3_ARATH2.241e-1533.70Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_CHAOB1.112e-1431.86Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR1_RALSO3.236e-1437.40Polygalacturonase OS=Ralstonia solanacearum GN=pgl... [more]
PGLR_PERAE5.520e-1427.94Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR_SOLLC7.210e-1428.92Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]
ADPG1_ARATH1.606e-1327.86Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-472 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417542 ID=CF417542; Name=CF417542; organism=Citrus sinensis; type=EST; length=658bp
TGTTTATTGCAGCAATGTTGTTATCCGTTATGTAACCATCTTGGCTCCAG
CTGACTCTCCCAATACCGATGGGATTGATCCAGATTCAAGCTCGAATGTC
TGCATAGAGGACTCCTATATTTCAACCGGAGATGATCTTGTGGCGGTAAA
GAGTGGGTGGGATGAGTATGGGATAGCTTATGGTCACCCTAGCTCTGGCA
TCACCATTAGGCGGGTAACAGGATCATCTCCATTTTCCGGAATTGCAGTT
GGGAGTGAAACCTCGGGTGGAGTGGAAAATGTCTTGGCTGAACACATTAA
CCTTTACAATGTAGGAGTTGGTATCCACGTTAAGACAAACATTGGTAGGG
GAGGATTCATAAGAAACATCACAGTCTCTGATGTATATATGGAAAACGCG
CGCAAGGGGATAAAGATTGCAGGTGATGTTGGTGACCACCCTGATGACAA
GTTCAATCCGAATGCTCTCCCAGTAGTCAATGGTATCACAATCAAGGATG
TCTGGGGAACGAAGGTCCAACAATCGGGTTTAATTCAAGGCTTGAAGAAC
TCTCCTTTCACTGGGATCTGTCTTTCTAACATTAACCTTCACGGTGTGGC
AGGACCACATCTCCTCCGTTAAAGTGCTCTGATGTAAGTGGATCTGCTTA
TCAGGTAA
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