CF417546

Overview
NameCF417546
Unique NameCF417546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417546_ssr320 microsatellite CF417546_ssr320:320..331. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8273 contig Csv1_Contig8273:1848..2521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.031e-88
Identity = 132/139 (94.96%), Postives = 136/139 (97.84%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPE 418
            KNYEVI FTDPVDEYLMQYLMDYEDKKFQNVSKEGLK+GKD+KDKELKESFKELTKWWKGALASENVDDVK+SNRL NTPCVVVTSKYGWS+NMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD E
Sbjct:  595 KNYEVILFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIGKDSKDKELKESFKELTKWWKGALASENVDDVKISNRLANTPCVVVTSKYGWSSNMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDAE 733          

HSP 2 Score: 74.3294 bits (181), Expect = 2.031e-88
Identity = 43/84 (51.19%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  420 DAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPXXXXXXXXXXXXXXXXXXMKESSAAKEDVDTEYSGKDEL 671
            D  V+QTA+L+YQTALMESGF LNDPK+FAS IY +VKSSL ISP                    ESSAA++        KDEL
Sbjct:  734 DESVKQTARLMYQTALMESGFMLNDPKEFASSIYDSVKSSLKISPDATVEEEDDTEEAEAESGTTESSAAEDAGAETLDLKDEL 817          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.788e-84
Identity = 124/139 (89.21%), Postives = 134/139 (96.40%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPE 418
            K YEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLK+GKD+KDKELKE+FKELTKWWKG LASENVDDVK+SNRL +TPCVVVTSK+GWSANMERIMQSQTLSDA+KQAYMRGKRVLEINPRHPIIKEL++R+  DPE
Sbjct:  591 KGYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKVGKDSKDKELKEAFKELTKWWKGNLASENVDDVKISNRLADTPCVVVTSKFGWSANMERIMQSQTLSDANKQAYMRGKRVLEINPRHPIIKELKDRIASDPE 729          

HSP 2 Score: 70.4774 bits (171), Expect = 3.788e-84
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  420 DAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISP 554
            D  V++TAQL+YQTAL+ESGF L DPKDFA+RIY++VKS LNISP
Sbjct:  730 DESVKETAQLMYQTALIESGFILTDPKDFAARIYNSVKSGLNISP 774          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.709e-78
Identity = 118/142 (83.10%), Postives = 131/142 (92.25%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEGCG 427
            KNYEVI+FTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKD+K K+LKESFKELT WWK AL +E +D VK+SNRL NTPCVVVTSKYGWS+NME+IMQ+QTLSDASKQAYMRGKRVLEINPRHPIIKELR++V +D +  G
Sbjct:  588 KNYEVIYFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKLKDLKESFKELTDWWKKALDTEGIDSVKISNRLHNTPCVVVTSKYGWSSNMEKIMQAQTLSDASKQAYMRGKRVLEINPRHPIIKELRDKVAQDSDSEG 729          

HSP 2 Score: 65.855 bits (159), Expect = 1.709e-78
Identity = 30/43 (69.77%), Postives = 39/43 (90.70%), Query Frame = 3
Query:  426 GVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISP 554
            G++QTA+L+YQTALMESGF+L DPKDFAS IY +V+ SL++SP
Sbjct:  729 GLKQTARLVYQTALMESGFNLPDPKDFASSIYRSVQKSLDLSP 771          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.484e-39
Identity = 72/141 (51.06%), Postives = 97/141 (68.79%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD 412
            + +EVI+ TDP+DEY +Q L +Y+ KK  +V+KEGL+L +  ++K    E K  F+ L K  K  L  + V+ V VSNRL ++PC +VTS+YGWSANMERIM++Q L D+S   YM  K+ LEINP H +IK LRERV  D
Sbjct:  496 RGFEVIYMTDPIDEYCVQQLKEYDGKKLVSVTKEGLELPESEEEKKKFEEDKVKFENLCKVMKDIL-EKKVEKVAVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKKHLEINPDHSVIKALRERVEAD 635          

HSP 2 Score: 43.8986 bits (102), Expect = 5.484e-39
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 3
Query:  420 DAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNIS 551
            D  V+    L+++TAL+ SGFSL DP+  ASRIY  +K  L+I+
Sbjct:  638 DKTVKDLVVLLFETALLSSGFSLEDPQLHASRIYRMIKLGLDIT 681          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: HSP83_ANOGA (Heat shock protein 83 OS=Anopheles gambiae GN=Hsp83 PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 1.580e-38
Identity = 70/141 (49.65%), Postives = 100/141 (70.92%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKES----FKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD 412
            + +EVI+ T+P+DEY++Q L +Y+ K+  +V+KEGL+L +D  +K+ +E     F+ L K  K  L S+ V+ V VSNRL ++PC +VTS+YGWSANMERIM++Q L D+S   YM GK+ LEINP H II+ LR+R   D
Sbjct:  494 RGFEVIYMTEPIDEYVIQQLKEYKGKQLVSVTKEGLELPEDEAEKKKREEDKAKFENLCKVMKSVLESK-VEKVMVSNRLVDSPCCIVTSQYGWSANMERIMKAQALRDSSAMGYMAGKKHLEINPDHAIIETLRQRAEAD 633          

HSP 2 Score: 42.3578 bits (98), Expect = 1.580e-38
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 3
Query:  420 DAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 548
            D  V+    L+++TAL+ SGFSL++P   ASRIY  +K  L I
Sbjct:  636 DKAVKDLVILLFETALLSSGFSLDEPGTHASRIYRMIKLGLGI 678          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.006e-37
Identity = 67/140 (47.86%), Postives = 96/140 (68.57%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFK----ELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVK 409
            KN EVI+  DP+DEY +Q L +Y+ KK  +++KEGLKL +   +K+  E  K    EL K  K  L  + V+ V +S RL N+PCV+VTS+YGWSANMERIM++Q L D+S  +YM  K+ LE+NP HPI+++L ++  +
Sbjct:  482 KNLEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQDKAANEELLKQVKDVLG-DKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAE 620          

HSP 2 Score: 43.5134 bits (101), Expect = 1.006e-37
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 3
Query:  447 LIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 548
            L+Y+TAL+ SGFSL++P  FASRI+  +K  L+I
Sbjct:  631 LLYETALLTSGFSLDEPSSFASRIHRMIKLGLSI 664          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: HSP85_TRYCR (Heat shock-like 85 kDa protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.311e-37
Identity = 65/141 (46.10%), Postives = 100/141 (70.92%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKE----SFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD 412
            + +EV+F T+P+DEY+MQ + D+EDKKF  ++KEG+   +  ++K+ +E    +++ L K  K  L  + V+ V VS RL  +PC++VTS++GWSA+ME+IM++Q L D+S  AYM  K+ +EINP HPI+KEL+ RV  D
Sbjct:  489 RGFEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEETEEEKKQREEEKTAYERLCKAMKDVLG-DKVEKVVVSERLATSPCILVTSEFGWSAHMEQIMRNQALRDSSMSAYMMSKKTMEINPAHPIVKELKRRVEAD 628          

HSP 2 Score: 40.817 bits (94), Expect = 1.311e-37
Identity = 17/43 (39.53%), Postives = 28/43 (65.12%), Query Frame = 3
Query:  420 DAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 548
            D  V+    L++ TAL+ SGF+L+DP  +A RI+  +K  L++
Sbjct:  631 DKAVKDLVYLLFDTALLTSGFTLDDPTSYAERIHRMIKLGLSL 673          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.224e-37
Identity = 66/141 (46.81%), Postives = 101/141 (71.63%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKES----FKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD 412
            + +EV++ T+P+DEY++Q+L +Y+ K+  +V+KEGL+L +D  +K+ +E     F+ L K  K  L S+ V+ V VSNRL ++PC +VTS++GWSANMERIM++Q L D +   YM GK+ LEINP HPI++ LR++   D
Sbjct:  499 RGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDEAEKKKREEDKAKFEGLCKLMKSILDSK-VEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVEALRQKADAD 638          

HSP 2 Score: 40.817 bits (94), Expect = 2.224e-37
Identity = 19/43 (44.19%), Postives = 28/43 (65.12%), Query Frame = 3
Query:  420 DAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 548
            D  V+    L+++T+L+ SGFSL+ P+  ASRIY  +K  L I
Sbjct:  641 DKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGI 683          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.224e-37
Identity = 65/141 (46.10%), Postives = 101/141 (71.63%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKES----FKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD 412
            + +EV++ T+P+DEY++Q+L +Y+ K+  +V+KEGL+L +D  +K+ +E     F+ L K  K  L ++ V+ V VSNRL ++PC +VTS++GWSANMERIM++Q L D +   YM GK+ LEINP HPI++ LR++   D
Sbjct:  499 RGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDESEKKKREEDKAKFESLCKLMKSILDNK-VEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADAD 638          

HSP 2 Score: 40.817 bits (94), Expect = 2.224e-37
Identity = 19/43 (44.19%), Postives = 28/43 (65.12%), Query Frame = 3
Query:  420 DAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 548
            D  V+    L+++T+L+ SGFSL+ P+  ASRIY  +K  L I
Sbjct:  641 DKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGI 683          
BLAST of CF417546 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.918e-37
Identity = 68/141 (48.23%), Postives = 97/141 (68.79%), Query Frame = 2
Query:    2 KNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD 412
            + +EV++  DP+DEY +Q L +Y+ KK  +V+KEGL+L +  ++K    E K +++ L K  K  L  + ++ V VSNRL ++PC +VTS+YGWSANMERIM++Q L D+S   YM  K+ LEINP H I+K LRERV  D
Sbjct:  488 RGFEVLYMCDPIDEYCVQQLKEYDGKKLVSVTKEGLELPETEEEKKKFEEDKVAYENLCKVIKDIL-EKKIEKVAVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKKHLEINPDHAIMKTLRERVEAD 627          

HSP 2 Score: 43.5134 bits (101), Expect = 4.918e-37
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3
Query:  420 DAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 548
            D  V+    L+++TAL+ SGFSL +P+  ASRIY  +K  L+I
Sbjct:  630 DKTVKDLVVLLFETALLSSGFSLEEPQSHASRIYRMIKLGLDI 672          
The following BLAST results are available for this feature:
BLAST of CF417546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
ENPL_CATRO2.031e-8894.96Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
ENPL_ARATH3.788e-8489.21Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD... [more]
ENPL_HORVU1.709e-7883.10Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
HSP90_BRUPA5.484e-3951.06Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HSP83_ANOGA1.580e-3849.65Heat shock protein 83 OS=Anopheles gambiae GN=Hsp8... [more]
HSC90_DICDI1.006e-3747.86Heat shock cognate 90 kDa protein OS=Dictyostelium... [more]
HSP85_TRYCR1.311e-3746.10Heat shock-like 85 kDa protein OS=Trypanosoma cruz... [more]
HSP83_DROPS2.224e-3746.81Heat shock protein 83 OS=Drosophila pseudoobscura ... [more]
HSP83_DROME2.224e-3746.10Heat shock protein 83 OS=Drosophila melanogaster G... [more]
HSP90_CAEBR4.918e-3748.23Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-476 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417546 ID=CF417546; Name=CF417546; organism=Citrus sinensis; type=EST; length=675bp
GAAGAACTATGAGGTGATTTTCTTCACTGATCCAGTTGATGAATACCTGA
TGCAATACCTGATGGATTATGAAGACAAAAAGTTCCAAAATGTATCCAAA
GAGGGTCTTAAACTTGGTAAAGACACTAAAGATAAGGAACTTAAGGAGTC
ATTCAAGGAGCTCACGAAATGGTGGAAGGGTGCTCTTGCCAGCGAGAACG
TGGATGATGTGAAAGTAAGCAACCGCTTGGATAACACCCCTTGCGTAGTT
GTGACATCAAAGTATGGTTGGAGTGCGAATATGGAGAGGATCATGCAGTC
TCAGACTCTCTCAGATGCTAGCAAGCAAGCATATATGCGGGGCAAGAGGG
TGCTTGAAATCAATCCAAGGCATCCAATCATCAAAGAGCTCCGGGAGAGA
GTCGTCAAGGACCCTGAGGGATGCGGGTGTCCAGCAAACAGCCCAACTCA
TTTACCAGACGGCACTCATGGAGAGTGGCTTTTCGCTCAATGATCCCAAG
GATTTTGCCTCCCGAATTTACAGCACGGTGAAATCTAGCCTTAACATTAG
CCCTGATGCAGCTGTTGAGGAGGAAGATGATGTANAAGAGACTGATGCTG
ACACTGAAATGAAAGAATCTTCGGCTGCCAAAGAGGACGTGGATACAGAG
TATTCTGGCAAGGATGAGTTGTAGA
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