CF417549

Overview
NameCF417549
Unique NameCF417549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417549_ssr29 microsatellite CF417549_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12637 contig Csv1_Contig12637:465..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.379e-29
Identity = 72/129 (55.81%), Postives = 81/129 (62.79%), Query Frame = 2
Query:  134 PQCGSSNVFESTNEGNAG--NYXXXXXXXXXXXXXXXXXXXXTALNAGVTNLDSDNGAAGNS---GVGGITERISGNVVDEVWVAQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQ 505
            PQCGSSNV+  T EGN    NY                      +NAG  N+ SDNGA  N    G G  +   SGN+ DE  ++QREAALTKFRQKRKERCF K+VRYQSRKKLAEQRPRVRGQFVR+
Sbjct:  583 PQCGSSNVYNETIEGNNNTVNYSVNGSVSGSGHGSNGPYGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRK 711          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.084e-26
Identity = 75/157 (47.77%), Postives = 90/157 (57.32%), Query Frame = 2
Query:  101 DVSFKNMVAAAPQCGSSNVFESTNEGNAGNYXXXXXXXXXXXXXXXXXXXXTALNAGVTNLDSDNGAAGNSGVGGITERISGNVVDEVW--VAQRE---AALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSD---ANSGKDTASN 547
            DVS +N  + APQCGSSNVF+   EG+A NY                    TA+NA   N++  NG    SG GG     SG+  D       QRE   AA+ KFRQKRKER FGK+VRYQSRK+LAEQRPRVRGQFVRQ   D      G++ A++
Sbjct:  585 DVSRENGGSGAPQCGSSNVFDPPVEGHAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQAVQDQQQQGGGREAAAD 741          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.084e-26
Identity = 75/157 (47.77%), Postives = 90/157 (57.32%), Query Frame = 2
Query:  101 DVSFKNMVAAAPQCGSSNVFESTNEGNAGNYXXXXXXXXXXXXXXXXXXXXTALNAGVTNLDSDNGAAGNSGVGGITERISGNVVDEVW--VAQRE---AALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSD---ANSGKDTASN 547
            DVS +N  + APQCGSSNVF+   EG+A NY                    TA+NA   N++  NG    SG GG     SG+  D       QRE   AA+ KFRQKRKER FGK+VRYQSRK+LAEQRPRVRGQFVRQ   D      G++ A++
Sbjct:  585 DVSRENGGSGAPQCGSSNVFDPPVEGHAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQAVQDQQQQGGGREAAAD 741          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25
Identity = 66/135 (48.89%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  137 QCGSSNVFESTNEGNAGNYXXXXXXXXXXXXXXXXXXXXTALNAGVTNLDSDNGAAGNSGVGGI--TERISGNVVDEVWVAQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANSGKD 535
            QCGSSNVF+   EG+A NY                    TA N G  N+++ NG    +G GG   +   SGN + +  V  REAAL KFRQKRK R FGK+VRYQSRK+LAEQRPR+RGQFVRQ   +  +G+D
Sbjct:  630 QCGSSNVFDPPIEGHAANYSVNGSFSGGHNGNNGQRGPSTAPNVGRPNMETVNGIVDENGAGGGNGSGSGSGNDLYQNGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQEDQAGQD 764          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25
Identity = 66/135 (48.89%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  137 QCGSSNVFESTNEGNAGNYXXXXXXXXXXXXXXXXXXXXTALNAGVTNLDSDNGAAGNSGVGGI--TERISGNVVDEVWVAQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANSGKD 535
            QCGSSNVF+   EG+A NY                    TA N G  N+++ NG    +G GG   +   SGN + +  V  REAAL KFRQKRK R FGK+VRYQSRK+LAEQRPR+RGQFVRQ   +  +G+D
Sbjct:  630 QCGSSNVFDPPIEGHAANYSVNGSFSGGHNGNNGQRGPSTAPNVGRPNMETVNGIVDENGAGGGNGSGSGSGNDLYQNGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQEDQAGQD 764          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.135e-16
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  371 AQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANS 526
            +QREAAL KFR KRK+RCF K+VRYQSRKKLAEQRPRV+GQFVR + SDA++
Sbjct:  415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDAST 466          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.037e-15
Identity = 37/47 (78.72%), Postives = 44/47 (93.62%), Query Frame = 2
Query:  374 QREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPS 514
            QREAALTKFR KRK+RC+ K+VRY+SRKKLAEQRPR++GQFVRQ+ S
Sbjct:  508 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQS 554          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  341 SGNVVDEV-----WVAQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQ 505
            S NVV E       ++QREAAL KFR KRK+RCF K+VRYQSRK LAEQRPRV+GQFVRQ
Sbjct:  557 SSNVVPENPDGLRHLSQREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQ 616          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  371 AQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANSGKD 535
            AQREAAL KFR KRKERCF K+VRY SRKKLAEQRP V+GQF+R+     +  +D
Sbjct:  440 AQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRKRDDHKSGSED 494          
BLAST of CF417549 vs. ExPASy Swiss-Prot
Match: PRR1_ORYSJ (Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.299e-13
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  374 QREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANSGKDTASNGHTSEDYSSD 577
            +R AAL KFR KRKERCF K+VRY +RKKLAE RPRVRGQFVRQ    AN    T++    SED   D
Sbjct:  442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQ----ANYTDITSTGDDISEDEDDD 505          
The following BLAST results are available for this feature:
BLAST of CF417549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APRR7_ARATH8.379e-2955.81Two-component response regulator-like APRR7 OS=Ara... [more]
PRR37_ORYSJ5.084e-2647.77Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSI5.084e-2647.77Two-component response regulator-like PRR37 OS=Ory... [more]
PRR73_ORYSJ2.523e-2548.89Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI2.523e-2548.89Two-component response regulator-like PRR73 OS=Ory... [more]
APRR9_ARATH8.135e-1676.92Two-component response regulator-like APRR9 OS=Ara... [more]
APRR5_ARATH4.037e-1578.72Two-component response regulator-like APRR5 OS=Ara... [more]
PRR95_ORYSJ3.418e-1470.00Two-component response regulator-like PRR95 OS=Ory... [more]
APRR3_ARATH5.830e-1467.27Two-component response regulator-like APRR3 OS=Ara... [more]
PRR1_ORYSJ1.299e-1361.76Two-component response regulator-like PRR1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-479 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417549 ID=CF417549; Name=CF417549; organism=Citrus sinensis; type=EST; length=589bp
GTCACACCATTCAGTTCAAGTGGAGAATCACCACCACCACTACCACCGTC
ATTATCATCAGCACGACCACAACATGCAGCAGTCACCACAGGACTGTGAT
GATGTCTCGTTCAAGAATATGGTAGCTGCAGCTCCACAGTGTGGGTCATC
AAATGTATTTGAGAGTACCAATGAAGGTAATGCTGGAAATTATAGTGTGA
ATGGGAGTGCCTCGGGGAGTAACCACGGCAGCAATGGACAAAATGGAAGC
AGCACTGCCTTGAATGCTGGAGTAACAAATTTGGACAGTGACAATGGGGC
AGCAGGAAATAGTGGAGTTGGTGGCATAACTGAAAGAATCAGTGGGAATG
TGGTAGATGAAGTTTGGGTTGCTCAGAGAGAAGCTGCCTTGACTAAATTT
CGTCAGAAAAGGAAAGAAAGGTGTTTCGGGAAGAGGGTTCGATATCAAAG
CCGGAAAAAATTGGCAGAACAAAGGCCACGTGTCAGGGGACAATTTGTTC
GACAACTACCGTCAGATGCCAATTCAGGAAAAGATACTGCGAGCAACGGC
CATACCTCTGAAGACTATTCTAGTGACAATCTAAGATAA
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