CF417550

Overview
NameCF417550
Unique NameCF417550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7003 contig Csv1_Contig7003:142..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417550 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 237
            DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of CF417550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_SILLA2.492e-38100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA2.492e-38100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE2.492e-38100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE2.492e-38100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR2.492e-38100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL2.492e-38100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ2.492e-38100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH2.492e-38100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT2.492e-38100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT2.492e-38100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-480 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417550 ID=CF417550; Name=CF417550; organism=Citrus sinensis; type=EST; length=464bp
GATAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCG
GGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCG
TTCTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACT
GAGCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCT
CAAGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGT
ATCGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGC
TTTTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTT
AAATGGGAATCTTGGTTTAATTTGTTANTGGTGTTTTCATTTTGTAACGT
TAATTACCCCTATGATTTTGAGTAGAATTAACGATAGATCGTTGTGAAGC
TTCTTGGTATAAAA
back to top