CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.458e-69
Identity = 127/164 (77.44%), Postives = 146/164 (89.02%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG+LQEA+ VI  MPI PTESVWGALLT C +H NTELAA+AAD+VFELG VS GM++ LSNAYAA GR+EDAAKARK+LRD+G KKETGLSWVEE N+VHTF AG+R H +++EIY+KL ELGEEMEKAGY+ DTS+VLR+VDGDEKNQTIRYHSERLAIA
Sbjct:  364 GRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIA 527          

HSP 2 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   49 KCGVIEPAYRVFEEVRVRNLGMWNAMLIACAQHSHMNKVFDLFKEMERS 195
            KCGV E AY+VF EV V+NLG+WNAML A AQHSH  KV +LFK M+ S
Sbjct:  264 KCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLS 312          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 85/164 (51.83%), Postives = 113/164 (68.90%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG L  A+  IE+MPI PT ++W ALL  CR+H NTEL AYAA+ VFEL    PG +V+L N YA+ GRW DAA+ RK +++ GVKKE   SWVE  N +H FVA D  H +  EI +K EE+  ++++ GYVPDTS V+  VD  E+   ++YHSE++A+A
Sbjct:  409 GRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALA 572          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 86/170 (50.59%), Postives = 112/170 (65.88%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAG L++A ++++ MP  P  ++WG LL   R+HGNTELA  AAD++F +   + GM VLLSN YA++GRW D  K R  +RD+GVKK  G SW+E  N+ HTF  GD  H    EI+  LEEL   M+KAGYV  TS VL  V+ +EK + +RYHSERLA+A
Sbjct:  551 CMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVA 720          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.790e-42
Identity = 81/164 (49.39%), Postives = 110/164 (67.07%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGD-EKNQTIRYHSERLAIA 682
            R+GK  +A SVIE +P  PT  +W ALL+GCR+HGN EL   AAD++F L     G  +LLSN +AA G+WE+ A+ RK++RD+GVKKE   SW+E   +VHTF+  D  H     +Y  L++LG+EM + GYVPDTSFVL  V+ D  K   +  HSE++A+A
Sbjct:  566 RSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVA 729          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 78/164 (47.56%), Postives = 108/164 (65.85%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG LQEA   IEKMPI P    WG+LL+ CR+H N +L   AA+R+  L   + G    L+N Y+A G+WE+AAK RK ++D  VKKE G SW+E  ++VH F   D  H    EIY  ++++ +E++K GYVPDT+ VL  ++ + K Q +R+HSE+LAIA
Sbjct:  562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIA 725          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 76/171 (44.44%), Postives = 110/171 (64.33%), Query Frame = 2
Query:  167 LICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679
            L C     GRAGK++EA   I+ M + P E VWGALL  CR+H +T++   AAD++F+L     G  VLLSN YA AGRWE+    R +++ +G+KK  G S VE    +HTF+ GDR H ++ EIY++L+ L ++M++ GYVPD+   L  V+ ++K   +  HSE+LAI
Sbjct:  449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 619          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.240e-37
Identity = 74/169 (43.79%), Postives = 106/169 (62.72%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679
            C     GRAGKLQEA  +I++MP  P   VWGALL  CR+  N +LA  AA+++F L   +PG  VLLSN YAA G W +    R  +   G+KK  G SW++  NRV+T +AGD+ H +  +I +K++E+ +EM K+G+ P+  F L  V+  E+ Q +  HSE+LA+
Sbjct:  530 CMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAV 698          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.240e-37
Identity = 77/164 (46.95%), Postives = 103/164 (62.80%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG+L  A+ +IE+MP+ P   VW A L+ CRIHG  EL  YAA+++ EL     G   LLSN YA AGRW+D  + R ++R +GVKK  G SWVE      TF  GD+ H   +EIYQ L +  + ++  GYVP+T F L  VD +EK+  +  HSE+LA+A
Sbjct:  626 GRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALA 789          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.240e-37
Identity = 73/170 (42.94%), Postives = 106/170 (62.35%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C      RAG+L++A+ VIE MP     ++W  +L  CR+H  TEL   AA+++  +        VLLSN YA +G W++ AK RK++ ++ VKKE G SW+E  N+ ++F+AGDR H    +IY KLE+L   ++  GY PDTS+VL+ +D + K   +  HSERLAIA
Sbjct:  637 CMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIA 806          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37
Identity = 78/170 (45.88%), Postives = 104/170 (61.18%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAG ++ A   I+KMPI PT SVWGAL   CR+HG  +L   AA+ +F+L     G +VLLSN +AAAGRW +A   R+ L+  G+KK  G SW+   N+VH F A DR H+  +EI   L +L  EME AGY PD    L  ++ +EK   + +HSE+LA+A
Sbjct:  454 CIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALA 623          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP429_ARATH6.458e-6977.44Putative pentatricopeptide repeat-containing prote... [more]
PP252_ARATH9.391e-4451.83Pentatricopeptide repeat-containing protein At3g24... [more]
PP301_ARATH7.950e-4350.59Pentatricopeptide repeat-containing protein At4g02... [more]
PPR57_ARATH8.790e-4249.39Pentatricopeptide repeat-containing protein At1g25... [more]
PP168_ARATH1.552e-3847.56Pentatricopeptide repeat-containing protein At2g22... [more]
PP271_ARATH7.700e-3844.44Putative pentatricopeptide repeat-containing prote... [more]
PPR53_ARATH2.240e-3743.79Pentatricopeptide repeat-containing protein At1g20... [more]
PP390_ARATH2.240e-3746.95Pentatricopeptide repeat-containing protein At5g16... [more]
PP172_ARATH2.240e-3742.94Pentatricopeptide repeat-containing protein At2g27... [more]
PP312_ARATH3.822e-3745.88Pentatricopeptide repeat-containing protein At4g14... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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