CF417619

Overview
NameCF417619
Unique NameCF417619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig470 contig Csv1_Contig470:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417619 vs. ExPASy Swiss-Prot
Match: RNE_HAEIN (Ribonuclease E OS=Haemophilus influenzae GN=rne PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 3
Query:    3 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLAMMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRTRLA 512
            D+N        G   E+  L+ NL AA +IAR+LRLR            M    ++R V   ++ AV  DR+ +++S +SR GL+E++R+R+ PS+       C  CQGTG+V   E+    I       L ++E++A  EN K        V   + +YL + KR  ++
Sbjct:  302 DINSARST--RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSI-------LRLLEEEALKENTKQVHTI---VPVQIASYLLNEKRKAIS 459          
BLAST of CF417619 vs. ExPASy Swiss-Prot
Match: RNG_HAEIN (Ribonuclease G OS=Haemophilus influenzae GN=rng PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    3 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 392
            D+N G    GH  + E+ I + N+ A K IA EL+LR            M  D ++  V + +  A+ +DR    V+  ++ GL+E+TRKR R S+  ++ + C  C G GRV+ +ET   +I +EI R+
Sbjct:  305 DINTG-AFVGH-RNLEETIFNTNIEATKAIAHELQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRMKTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRV 432          
BLAST of CF417619 vs. ExPASy Swiss-Prot
Match: RNG_SHIFL (Ribonuclease G OS=Shigella flexneri GN=rng PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    3 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 392
            D+N G    GH  + +  I + N+ A + IAR+LRLR            M ++ ++R V   +++A+ +DR    V+  S  GL+E+TRKR R S+  ++   C  C G G V+ +ET   +I +EI R+
Sbjct:  304 DINTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431          
BLAST of CF417619 vs. ExPASy Swiss-Prot
Match: RNG_ECOLI (Ribonuclease G OS=Escherichia coli (strain K12) GN=rng PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    3 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 392
            D+N G    GH  + +  I + N+ A + IAR+LRLR            M ++ ++R V   +++A+ +DR    V+  S  GL+E+TRKR R S+  ++   C  C G G V+ +ET   +I +EI R+
Sbjct:  304 DINTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431          
BLAST of CF417619 vs. ExPASy Swiss-Prot
Match: RNG_ECOL6 (Ribonuclease G OS=Escherichia coli O6 GN=rng PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    3 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 392
            D+N G    GH  + +  I + N+ A + IAR+LRLR            M ++ ++R V   +++A+ +DR    V+  S  GL+E+TRKR R S+  ++   C  C G G V+ +ET   +I +EI R+
Sbjct:  304 DINTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431          
BLAST of CF417619 vs. ExPASy Swiss-Prot
Match: RNG_ECO57 (Ribonuclease G OS=Escherichia coli O157:H7 GN=rng PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    3 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 392
            D+N G    GH  + +  I + N+ A + IAR+LRLR            M ++ ++R V   +++A+ +DR    V+  S  GL+E+TRKR R S+  ++   C  C G G V+ +ET   +I +EI R+
Sbjct:  304 DINTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431          
BLAST of CF417619 vs. ExPASy Swiss-Prot
Match: RNE_ECOLI (Ribonuclease E OS=Escherichia coli (strain K12) GN=rne PE=1 SV=6)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 50/174 (28.74%), Postives = 85/174 (48.85%), Query Frame = 3
Query:    3 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLAMMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSS 524
            D+N        G   E+   + NL AA +IAR+LRLR            M    ++R V   +++AV +DR+ +++S +SR GL+E++R+R+ PS+       C  C GTG V   E+    I       L ++E++A  EN +        V   + +YL + KR+ +  + +
Sbjct:  303 DINSARAT--RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI-------LRLIEEEALKENTQEVHAI---VPVPIASYLLNEKRSAVNAIET 464          
The following BLAST results are available for this feature:
BLAST of CF417619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RNE_HAEIN2.107e-1331.18Ribonuclease E OS=Haemophilus influenzae GN=rne PE... [more]
RNG_HAEIN3.593e-1333.85Ribonuclease G OS=Haemophilus influenzae GN=rng PE... [more]
RNG_SHIFL8.005e-1333.08Ribonuclease G OS=Shigella flexneri GN=rng PE=3 SV... [more]
RNG_ECOLI8.005e-1333.08Ribonuclease G OS=Escherichia coli (strain K12) GN... [more]
RNG_ECOL68.005e-1333.08Ribonuclease G OS=Escherichia coli O6 GN=rng PE=3 ... [more]
RNG_ECO578.005e-1333.08Ribonuclease G OS=Escherichia coli O157:H7 GN=rng ... [more]
RNE_ECOLI5.189e-1228.74Ribonuclease E OS=Escherichia coli (strain K12) GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-549 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417619 ID=CF417619; Name=CF417619; organism=Citrus sinensis; type=EST; length=657bp
TTGATGTGAATGGAGGGCATGGGATGTTTGGTCATGGGTCATCAAAAGAG
AAGGCTATTCTAGATGTCAACCTGGCAGCTGCAAAACAAATTGCAAGGGA
GTTACGGCTAAGAGATATTGGTGGCATCATTGTTGTAGATTTTATTGATA
TGGCTGATGACTCAAATAAGAGATTGGTCTATGAAGAAGTCAAGAAAGCT
GTTGAGAGAGATCGGTCAATGGTGAAAGTCTCTGAACTGTCTAGACATGG
ACTGATGGAAATAACAAGGAAGAGGGTTCGACCCAGTGTTACATTTATGA
TTAGTGAACCATGCACTTGCTGTCAGGGTACCGGGAGAGTTGAAGCTTTA
GAGACCTCGTTCTCAAAAATTGAGCAAGAAATTAGTCGGTTGCTTGCAAT
GATGGAGCAGAAAGCAGACCCTGAAAATCCCAAGTCCTGGCCAAGATTTA
TTCTGCGGGTGGATCATCACATGTGTAACTATTTAACTTCAGGGAAAAGG
ACAAGACTTGCAGTCTTAAGTAGTTCCCTCAAAGCTTGGATTCTTTTGAA
GGTGGCTAGGGGCTTCACTCGTGGAGCATTTGAAGTGATACCATATACTG
ATGACAAGGCAAGTGAAAATCAGCATCAAGTTGCTATTTCTTTGCTCCGA
TCGGCAG
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