CF417628

Overview
NameCF417628
Unique NameCF417628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9832 contig Csv1_Contig9832:107..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.407e-60
Identity = 118/148 (79.73%), Postives = 130/148 (87.84%), Query Frame = 1
Query:    1 SSVLRSVKTLAKPAGAR------GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            +S+LR +++ +  A  R       Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+VNMI
Sbjct:    3 ASMLRLIRSRSSSAAPRPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLVSQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAVVNMI 150          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.556e-59
Identity = 113/148 (76.35%), Postives = 131/148 (88.51%), Query Frame = 1
Query:    1 SSVLRSVKTLAKPAGA------RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            +S+LRSV++    + +      R +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSEV GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA++NMI
Sbjct:    3 ASILRSVRSAVSRSSSSNRLLSRSFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMI 150          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.456e-57
Identity = 113/141 (80.14%), Postives = 125/141 (88.65%), Query Frame = 1
Query:    4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            S++RSV  +A+    RGYSSESVP RKVAVLGAAGGIGQPLALLMKLNPLVS+L+LYDIA TPGVAADV HINTRSEV GY G +QLG+ALE  DVVIIPAGVPRKPGMTRDDLFNINAGIV+ L +AIAKYCP+AI+NMI
Sbjct:    6 SLIRSVSRVAR----RGYSSESVPQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMI 142          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.456e-57
Identity = 109/142 (76.76%), Postives = 126/142 (88.73%), Query Frame = 1
Query:    1 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            S ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LYDIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L  AIAKYCP A+VNMI
Sbjct:    4 SMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMI 145          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.902e-57
Identity = 109/142 (76.76%), Postives = 126/142 (88.73%), Query Frame = 1
Query:    1 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            S ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYDIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+LC+AIAKYCP+A++NMI
Sbjct:    4 SMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMI 145          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.103e-56
Identity = 109/142 (76.76%), Postives = 126/142 (88.73%), Query Frame = 1
Query:    1 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            S+++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYDIANTPGVAADVGHINTRS+V GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L SAIAKYCP+A+VNMI
Sbjct:    4 SALVRSSASAKQSLLRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLWSAIAKYCPHALVNMI 145          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 1.197e-43
Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 1
Query:   43 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            G+   +  + P  KVA+LGA+GGIGQPLALLMK+NPLVS L LYD+ NTPGV AD+ H+NT + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK CPNAIVN+I
Sbjct:   33 GSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVI 160          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.323e-42
Identity = 90/142 (63.38%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    1 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            SSVLR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G  QL +AL   D+V+IPAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIVN+I
Sbjct:   28 SSVLRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLI 160          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.257e-42
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1
Query:   82 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV +D+ H++T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC AIAK CP AIVN+I
Sbjct:   43 KVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVI 157          
BLAST of CF417628 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 3.851e-42
Identity = 87/139 (62.59%), Postives = 109/139 (78.42%), Query Frame = 1
Query:   19 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 426
            +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A+V +I
Sbjct:    2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMVCII 140          
The following BLAST results are available for this feature:
BLAST of CF417628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
MDHM_EUCGU1.407e-6079.73Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHM_CITLA1.556e-5976.35Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHM_FRAAN1.456e-5780.14Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM2_ARATH1.456e-5776.76Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM1_ARATH1.902e-5776.76Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_BRANA2.103e-5676.76Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHG_ORYSJ1.197e-4367.19Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG_CUCSA1.323e-4263.38Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_SOYBN2.257e-4272.17Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHM_MOUSE3.851e-4262.59Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-558 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417628 ID=CF417628; Name=CF417628; organism=Citrus sinensis; type=EST; length=428bp
TCTTCAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACG
CGGCTACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTG
CCGCTGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCG
CTTGTCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGC
TGCTGATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGG
GTAATGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATA
CCGGCTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAA
CATCAATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATT
GTCCCAATGCAATTGTTAACATGATTAG
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