CF417660

Overview
NameCF417660
Unique NameCF417660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12221 contig Csv1_Contig12221:134..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 8.803e-113
Identity = 201/217 (92.63%), Postives = 205/217 (94.47%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG  P + P + P     GDNMIERSTNLDWYKGPTLL+ALD INEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 405.986 bits (1042), Expect = 8.803e-113
Identity = 201/217 (92.63%), Postives = 205/217 (94.47%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG  P + P + P     GDNMIERSTNLDWYKGPTLL+ALD INEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.150e-112
Identity = 201/217 (92.63%), Postives = 204/217 (94.01%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG  P +  H  P     GDNMIERSTNLDWYKGPTLL+ALD INEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP-DKIHFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLINEPK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.150e-112
Identity = 200/217 (92.17%), Postives = 205/217 (94.47%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEI+KEVSSYLKKVG  P + P + P     GDNMIERSTNLDWYKGPTLL+ALD INEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.502e-112
Identity = 200/217 (92.17%), Postives = 205/217 (94.47%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET++YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK RY+EIVKEVSSYLKKVG  P + P + P     GDNMIERSTNLDWYKGPTLLDALDNINEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETSKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 2.561e-112
Identity = 200/217 (92.17%), Postives = 205/217 (94.47%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARY+EIVKEVSSYLKKVG  P + P + P     GDNMIERSTNLDWYKGPTLL+ALD INEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYEEIVKEVSSYLKKVGYNPDKVPFV-PISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 404.445 bits (1038), Expect = 2.561e-112
Identity = 200/217 (92.17%), Postives = 205/217 (94.47%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALL+FTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG  P + P + P     GDNMIERSTNLDWYKGPTLLDALD I+EPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIERSTNLDWYKGPTLLDALDQISEPK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 4.369e-112
Identity = 200/217 (92.17%), Postives = 204/217 (94.01%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG  P + P + P     GDNMIERSTNLDWYKGPTLL+ALD I EPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIERSTNLDWYKGPTLLEALDQIQEPK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 1.660e-111
Identity = 199/217 (91.71%), Postives = 204/217 (94.01%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG  P + P + P     GDNMIERSTNLDWYKGPTLL+ALD IN+ K
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIERSTNLDWYKGPTLLEALDQINDAK 227
[Close]
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 1.660e-111
Identity = 200/217 (92.17%), Postives = 201/217 (92.63%), Query Frame = 3 
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET +YYCTVIDAPGHRDFIKNMITGTSQADCAVLIID TTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG  P E     P     GDNMIERSTNLDWYKGPTLLDALD INEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP-EKIAFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQINEPK 227
The following BLAST results are available for this feature:
BLAST of CF417660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_SOLLC8.803e-11392.63Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_ORYSJ8.803e-11392.63Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE1.150e-11292.63Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_ARATH1.150e-11292.17Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_VICFA1.502e-11292.17Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_WHEAT2.561e-11292.17Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_SOYBN2.561e-11292.17Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_MANES4.369e-11292.17Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC1.660e-11191.71Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A1_DAUCA1.660e-11192.17Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-590 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417660 ID=CF417660; Name=CF417660; organism=Citrus sinensis; type=EST; length=653bp
TGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTG
ATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAA
GGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCG
ACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTG
TGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGG
ACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACT
GTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATC
TCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGG
TGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCTA
AGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAAGTCTCTTCCTAC
CTGAAGAAGGTTGGGATACNACCCCGAGAAAGTCCCCATTTGTGCCCATC
TCTGGNTTCGAGGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACT
GGTACAAGGGTCCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCG
AAA
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