CF417661 | Citrus Genome Database

Overview


Name	CF417661
Unique Name	CF417661
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	670

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.007e-25
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 2

Query:  197 KDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 349
            KDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   32 KDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82

HSP 2 Score: 37.3502 bits (85), Expect = 2.007e-25
Identity = 17/32 (53.12%), Postives = 17/32 (53.12%), Query Frame = 1

Query:   16 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK 111
            MTF              VK IRCSNCGKCCPK
Sbjct:    1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 7.484e-25
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 2

Query:  197 KDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 349
            KDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   32 KDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82

HSP 2 Score: 35.4242 bits (80), Expect = 7.484e-25
Identity = 16/32 (50.00%), Postives = 16/32 (50.00%), Query Frame = 1

Query:   16 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK 111
            MTF              V  IRCSNCGKCCPK
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 7.499e-25
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 2

Query:  197 KDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 349
            KDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   32 KDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82

HSP 2 Score: 35.4242 bits (80), Expect = 7.499e-25
Identity = 16/32 (50.00%), Postives = 16/32 (50.00%), Query Frame = 1

Query:   16 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK 111
            MTF              V  IRCSNCGKCCPK
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.148e-24
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 2

Query:  173 SNLLIYIKKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 349
            SN      KDKAIKRF VRNIVEQAA+RDVQEACV+DGY LPKLYAK+ +CVSCAIH+H
Sbjct:   24 SNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAH 82

HSP 2 Score: 37.7354 bits (86), Expect = 2.148e-24
Identity = 16/32 (50.00%), Postives = 17/32 (53.12%), Query Frame = 1

Query:   16 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK 111
            MTF              VK+IRCSNC KCCPK
Sbjct:    1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.458e-18
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 2

Query:  191 IKKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 346
            + KDKAIK+F++RNIVE AAVRD+ +A VY+ Y LPKLYAK+ YCVSCAIHS
Sbjct:   30 VPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIHS 81

HSP 2 Score: 30.8018 bits (68), Expect = 1.458e-18
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1

Query:   67 VKFIRCSNCGKCCPK 111
            VK+IRC+NC +C PK
Sbjct:   18 VKYIRCTNCARCVPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-18
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 2

Query:  197 KDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 346
            KDKAIK+F+VRNIVE AAVRD+ +A  Y  Y LPKLY K+ YC++CAIHS
Sbjct:   32 KDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHS 81

HSP 2 Score: 36.5798 bits (83), Expect = 2.529e-18
Identity = 15/32 (46.88%), Postives = 17/32 (53.12%), Query Frame = 1

Query:   16 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK 111
            MTF              V FIRC+NCG+CCPK
Sbjct:    1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS26_DROME (40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.290e-18
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 2

Query:  191 IKKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 346
            + KDKAIK+F++RNIVE AAVRD+ EA ++D Y LPKLYAK+ YCVSCAIHS
Sbjct:   30 VPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHS 81

HSP 2 Score: 27.7202 bits (60), Expect = 3.290e-18
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1

Query:   67 VKFIRCSNCGKCCPK 111
            VK +RC+NC +C PK
Sbjct:   18 VKPVRCTNCARCVPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS26_ANOGA (40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.290e-18
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2

Query:  191 IKKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 346
            + KDKAIK+F++RNIVE AAVRD+ +A VY  Y LPKLYAK+ YCVSCAIHS
Sbjct:   30 VPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIHS 81

HSP 2 Score: 28.4906 bits (62), Expect = 3.290e-18
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1

Query:   67 VKFIRCSNCGKCCPK 111
            VK +RC+NC +C PK
Sbjct:   18 VKAVRCTNCARCVPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.414e-18
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2

Query:  191 IKKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 346
            + KDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   30 VPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81

HSP 2 Score: 26.5646 bits (57), Expect = 9.414e-18
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1

Query:   67 VKFIRCSNCGKCCPK 111
            V+ IRC+NC +C PK
Sbjct:   18 VQPIRCTNCARCVPK 32

[Close]

BLAST of CF417661 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 9.414e-18
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2

Query:  191 IKKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 346
            + KDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   30 VPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81

HSP 2 Score: 26.5646 bits (57), Expect = 9.414e-18
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1

Query:   67 VKFIRCSNCGKCCPK 111
            V+ IRC+NC +C PK
Sbjct:   18 VQPIRCTNCARCVPK 32

The following BLAST results are available for this feature:

BLAST of CF417661 vs. ExPASy Swiss-Prot

BLAST of CF417661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RS263_ARATH	2.007e-25	90.20	40S ribosomal protein S26-3 OS=Arabidopsis thalian...	[more]
RS262_ARATH	7.484e-25	90.20	40S ribosomal protein S26-2 OS=Arabidopsis thalian...	[more]
RS261_ARATH	7.499e-25	90.20	40S ribosomal protein S26-1 OS=Arabidopsis thalian...	[more]
RS26_ORYSJ	2.148e-24	76.27	40S ribosomal protein S26 OS=Oryza sativa subsp. j...	[more]
RS26_OCTVU	1.458e-18	71.15	40S ribosomal protein S26 OS=Octopus vulgaris GN=R...	[more]
RS26_CAEEL	2.529e-18	68.00	40S ribosomal protein S26 OS=Caenorhabditis elegan...	[more]
RS26_DROME	3.290e-18	71.15	40S ribosomal protein S26 OS=Drosophila melanogast...	[more]
RS26_ANOGA	3.290e-18	71.15	40S ribosomal protein S26 OS=Anopheles gambiae GN=...	[more]
RS26_RAT	9.414e-18	71.15	40S ribosomal protein S26 OS=Rattus norvegicus GN=...	[more]
RS26_PIG	9.414e-18	71.15	40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-591 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_G07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417661 ID=CF417661; Name=CF417661; organism=Citrus sinensis; type=EST; length=670bp
AAAAATAACAAGAAAATGACGTTCAAGCGGAGGAACGGAGGAAGGAACAA
GCACGGCCGTGGCCATGTCAAGTTCATCCGCTGCTCTAACTGCGGCAAAT
GCTGCCCTAAGGTACTTTTTCTGTATGTTTCCAGAGGAAAAATGCAGGAA
AAAAATTTTCGTCTAAAAATTTTCTAATTTACTTATTTATATTAAAAAGG
ACAAGGCGATTAAGAGGTTTTTGGTGAGGAACATTGTTGAGCAAGCTGCT
GTTAGGGATGTTCAGGAGGCGTGTGTTTATGACGGTTACACTCTTCCTAA
GTTATATGCTAAGATGCAGTACTGCGTCTCGTGTGCGATCCACTCTCATG
TGGTGAGAGTTCGTTCCCGTACTAACAGGAGGATCCGTGAGCCCCCACAA
CGCTTCAGGCGCAGGGATGATGTGCCAAAGGCTGGTGGTGCTCTTGGTCA
AGGCCCACGTGCTGGTGGTCCAGCTGGAGCTCCAGCTGCTGCTCGTGCTT
GAAAGCTTTCTGCTGTCGGTGCTTCTGGTCCTTTGAGGCTTTTGAGATTT
TTATGTGGTGGTATCAGATATGTGGGTCTGTTTAATTANAGCACTGCAAA
CTTTTATGNTAGTTTTGGTGTTTTGTTGTCGTGCATCAGAGAACTGTTTA
CTGTCACAAGTTTGAATCAA