CF417667

Overview
NameCF417667
Unique NameCF417667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11486 contig Csv1_Contig11486:451..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 304.679 bits (779), Expect = 2.934e-82
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVSDPSLTKSGVYWSWN  SASFENQLS+EASDVEKARKVWEISEKLVGLA
Sbjct:  244 ANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGVTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORA_ARATH (Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=2 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 3.832e-82
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV+DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct:  248 ANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 6.536e-82
Identity = 146/158 (92.41%), Postives = 151/158 (95.57%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG AGGL GLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE+E+GKRLAQVVSDPSLTKSGVYWSWN  SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  242 ANLGDLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 6.536e-82
Identity = 145/158 (91.77%), Postives = 153/158 (96.84%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG AGGLNG+NSS+MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVS+PSLTKSGVYWSWNKDSASFENQLS+EASDVEKARKVWE+SEKLVGLA
Sbjct:  241 ANLGDLRGLAGGLNGMNSSAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORB_HORVU (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.586e-80
Identity = 141/158 (89.24%), Postives = 152/158 (96.20%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG A GLNG+ S++MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETG+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVS+PSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWE+SEKLVGLA
Sbjct:  238 ANLGDLRGLAAGLNGVGSAAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORA_CUCSA (Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.586e-80
Identity = 144/158 (91.14%), Postives = 153/158 (96.84%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG AGGLNGL SS MIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI FASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQVVS+PSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  242 ANLGDLRGLAGGLNGLKSS-MIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORB_ORYSJ (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.965e-79
Identity = 139/158 (87.97%), Postives = 152/158 (96.20%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG A GL+G++SS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHRR+H ETG+ FASLYPGCIATTGLFREH+PLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSLTKSGVYWSWN +SASFENQLS+EASD EKA+KVWE+SEKLVGLA
Sbjct:  241 ANLGDLRGLASGLDGVSSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHGETGVTFASLYPGCIATTGLFREHVPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNNNSASFENQLSEEASDPEKAKKVWELSEKLVGLA 398          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORC_ARATH (Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.176e-77
Identity = 139/158 (87.97%), Postives = 149/158 (94.30%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG A GLNG NSS MIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEETG+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSL KSGVYWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA
Sbjct:  245 ANLGDLRGLASGLNGQNSS-MIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEETGVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORA_ORYSJ (Protochlorophyllide reductase A, chloroplastic OS=Oryza sativa subsp. japonica GN=PORA PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.359e-76
Identity = 136/158 (86.08%), Postives = 147/158 (93.04%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 471
            A LGDLRG AGGL G N S+MIDG + FDGAKAYKDSK+CNMLTMQEFHRRFHEETGI FASLYPGCIATTGLFREHIPLFRLLFPPFQ+++TKG+VSE E+GKRLAQVV DPSLTKSGVYWSWNKDSASFENQLSQEASD EKARK+W++SEKLVGL
Sbjct:  229 AGLGDLRGLAGGLRGQNGSAMIDGAESFDGAKAYKDSKICNMLTMQEFHRRFHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQRFVTKGFVSEAESGKRLAQVVGDPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKLWDLSEKLVGL 386          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: POR_AVESA (Protochlorophyllide reductase (Fragment) OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.194e-75
Identity = 136/159 (85.53%), Postives = 148/159 (93.08%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDLRG AGGL G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HE+TGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV +PSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  155 ANLGDLRGLAGGLTGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEDTGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 313          
The following BLAST results are available for this feature:
BLAST of CF417667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PORB_ARATH2.934e-8293.04Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_ARATH3.832e-8293.04Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_PEA6.536e-8292.41Protochlorophyllide reductase, chloroplastic OS=Pi... [more]
POR_DAUCA6.536e-8291.77Protochlorophyllide reductase, chloroplastic OS=Da... [more]
PORB_HORVU3.586e-8089.24Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_CUCSA3.586e-8091.14Protochlorophyllide reductase, chloroplastic OS=Cu... [more]
PORB_ORYSJ3.965e-7987.97Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORC_ARATH2.176e-7787.97Protochlorophyllide reductase C, chloroplastic OS=... [more]
PORA_ORYSJ5.359e-7686.08Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_AVESA1.194e-7585.53Protochlorophyllide reductase (Fragment) OS=Avena ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-597 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417667 ID=CF417667; Name=CF417667; organism=Citrus sinensis; type=EST; length=675bp
GCCAACCTTGGGGACTTAAGGGGATTTGCTGGAGGCTTAAATGGGCTAAA
CAGCTCATCCATGATTGACGGTGGAGATTTTGACGGTGCCAAGGCCTACA
AGGACAGCAAAGTCTGCAACATGCTTACCATGCAAGAGTTTCACAGGCGG
TTCCACGAGGAAACTGGCATCGCATTCGCTTCCCTTTACCCTGGCTGCAT
TGCCACAACAGGCTTGTTCAGGGAGCACATTCCCTTGTTCAGACTTCTCT
TCCCCCCATTCCAAAAGTACATCACCAAGGGTTATGTCTCTGAAGATGAA
GCTGGAAAAAGACTTGCTCAGGTTGTGAGCGATCCAAGCTTGACAAAATC
AGGTGTTTACTGGAGCTGGAACAAGGACTCAGCTTCATTTGAGAATCAGT
TGTCTCAGGAAGCTAGTGACGTTGAGAAGGCACGTAAAGTCTGGGAGATA
AGTGAGAAACTTGTTGGTTTGGCCTAATTCAAAACCTGGAGATTCAGATC
TACCAGTTTATGTTATGGGAGGGTTTTATGAGCTTGAAGGTTTGTTAGGT
AGCGGAGGGTTTTATGAGCTTGAAGGTTTGTTAGGTAGCGGAGTTTGGAA
TTGTGGTCAGCTTTTCNATTGTAGATGTAGATGGCTTGTGGAAAAAAAAT
GTCAATAAATCACTCACTCCTGTTG
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