CF417670
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417670 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 3.140e-23 Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 2 Query: 14 KDLKVGVPRISNLQLEQPTENGPNTIASSNKVKSSEINSQKDDEPQQTKKLELNSEKLNAGLRKQAADIAGVITNGNDSPIESVVFDTPNGLFKVSGTKEKLIYDHNEIPSLELSLKRSREDGD--TGTHRHDRNVLRHSDLHSAFSRYKSASTANQASTG 490 KDL++G PR N + SS +S + ++++ P Q E E L +AAD+ G + D+ + + PN KV K+K N +PSLELSLKRSR GD RNVLR SDL SAF+RY + +NQ TG Sbjct: 310 KDLEIGSPRNLNTAYQ-----------SSPNERSIKPTDRRNEYPLQNNSKEAAMENLEES-SVRAADLIGSMAKNMDAQQAARATNAPNCSSKVPEGKDK--NRDNIMPSLELSLKRSRSTGDDANAIQEEQRNVLRRSDL-SAFTRYHTPVASNQGGTG 455 HSP 2 Score: 58.5362 bits (140), Expect = 3.140e-23 Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 Query: 490 GMVGSCSPLDNSSEAAKTNSIQNCQSNLSSTPPSQHSNVSNNNSDVGLTT 639 G VGSCSP DN SEA KT+S N +SN + P Q SN S+NN+D+G TT Sbjct: 455 GFVGSCSPHDNISEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTT 504
BLAST of CF417670 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.982e-22 Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 2 Query: 14 KDLKVGVPRISNLQLEQPTENGPNTIASSNKVKSSEINSQKDDEPQQTKKLELNSEKLNAGLRKQAADIAGVITNGNDSPIESVVFDTPNGLFKVSGTKEKLIYDHNEIPSLELSLKRSREDGD--TGTHRHDRNVLRHSDLHSAFSRYKSASTANQASTG 490 KDL++G PR N + SS +S + ++++ P Q E E L +AAD+ G + D+ + + PN KV K+K N +PSLELSLKRSR GD RNVLR SDL SAF+RY + +NQ TG Sbjct: 310 KDLEIGSPRNLNTAYQ-----------SSPNERSIKPTDRRNEYPLQNNSKEAAMENLEES-SVRAADLIGSMAKNMDAQQAARAANAPNCSSKVPEGKDK--NRDNIMPSLELSLKRSRSTGDGANAIQEEQRNVLRRSDL-SAFTRYHTPVASNQGGTG 455 HSP 2 Score: 55.8398 bits (133), Expect = 1.982e-22 Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 Query: 490 GMVGSCSPLDNSSEAAKTNSIQNCQSNLSSTPPSQHSNVSNNNSDVGLTT 639 G +GSCS DNSSEA KT+S N +SN + P Q SN S+NN+D+G TT Sbjct: 455 GFMGSCSLHDNSSEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTT 504
BLAST of CF417670 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 6.640e-15 Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 Query: 490 GMVGSCSPLDNSSEAAKTNSIQNCQSNLSSTPPSQHSNVSNNNSDVGLTTNASST 654 G GSCSP DNSSEA KT+S +SN + Q SN S+NN+D+G +T + T Sbjct: 483 GFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAIT 537 HSP 2 Score: 50.447 bits (119), Expect = 6.640e-15 Identity = 45/173 (26.01%), Postives = 75/173 (43.35%), Query Frame = 2 Query: 14 KDLKVGVPRISNLQLEQ--------PTENGPNTIASSNKVKSSEINSQKDDEPQQTKKLELNSEKLNAGLRKQ------AADIAGVITNGNDSPIESVVFDTPNGLFKVSGTKEKLIYDHNEIPSLELSLKRSREDGDTGTHRHDRNVLRHSDLHSAFSRYKSASTANQASTG 490 K L++G PR S+++ + PTE T+ +K + E +S+ T+ ++L S + KQ A D + + +GND +S++ ++ S EL LKR + G +RN+L+ SDL SAF+RY + +NQ G Sbjct: 335 KYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKT-TRETDSRNTQNEPTTQTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLI----------------------DMTSEELGLKRLKTTGSATEIHDERNILKRSDL-SAFTRYHTTVASNQGGAG 483
BLAST of CF417670 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2) HSP 1 Score: 50.8322 bits (120), Expect = 6.640e-15 Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 Query: 490 GMVGSCSPLDNSSEAAKTNSIQNCQSNLSSTPPSQHSNVSNNNSDVGLTTNASST 654 G GSCSP DNSSEA KT+S +SN + Q SN S+NN+D+G +T + T Sbjct: 483 GFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAIT 537 HSP 2 Score: 50.447 bits (119), Expect = 6.640e-15 Identity = 45/173 (26.01%), Postives = 75/173 (43.35%), Query Frame = 2 Query: 14 KDLKVGVPRISNLQLEQ--------PTENGPNTIASSNKVKSSEINSQKDDEPQQTKKLELNSEKLNAGLRKQ------AADIAGVITNGNDSPIESVVFDTPNGLFKVSGTKEKLIYDHNEIPSLELSLKRSREDGDTGTHRHDRNVLRHSDLHSAFSRYKSASTANQASTG 490 K L++G PR S+++ + PTE T+ +K + E +S+ T+ ++L S + KQ A D + + +GND +S++ ++ S EL LKR + G +RN+L+ SDL SAF+RY + +NQ G Sbjct: 335 KYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKT-TRETDSRNTQNEPTTQTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLI----------------------DMTSEELGLKRLKTTGSATEIHDERNILKRSDL-SAFTRYHTTVASNQGGAG 483 The following BLAST results are available for this feature:
BLAST of CF417670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417670 ID=CF417670; Name=CF417670; organism=Citrus sinensis; type=EST; length=659bpback to top |