CF417670

Overview
NameCF417670
Unique NameCF417670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417670 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.140e-23
Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 2
Query:   14 KDLKVGVPRISNLQLEQPTENGPNTIASSNKVKSSEINSQKDDEPQQTKKLELNSEKLNAGLRKQAADIAGVITNGNDSPIESVVFDTPNGLFKVSGTKEKLIYDHNEIPSLELSLKRSREDGD--TGTHRHDRNVLRHSDLHSAFSRYKSASTANQASTG 490
            KDL++G PR  N   +           SS   +S +   ++++ P Q    E   E L      +AAD+ G +    D+   +   + PN   KV   K+K     N +PSLELSLKRSR  GD         RNVLR SDL SAF+RY +   +NQ  TG
Sbjct:  310 KDLEIGSPRNLNTAYQ-----------SSPNERSIKPTDRRNEYPLQNNSKEAAMENLEES-SVRAADLIGSMAKNMDAQQAARATNAPNCSSKVPEGKDK--NRDNIMPSLELSLKRSRSTGDDANAIQEEQRNVLRRSDL-SAFTRYHTPVASNQGGTG 455          

HSP 2 Score: 58.5362 bits (140), Expect = 3.140e-23
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  490 GMVGSCSPLDNSSEAAKTNSIQNCQSNLSSTPPSQHSNVSNNNSDVGLTT 639
            G VGSCSP DN SEA KT+S  N +SN  + P  Q SN S+NN+D+G TT
Sbjct:  455 GFVGSCSPHDNISEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTT 504          
BLAST of CF417670 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.982e-22
Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 2
Query:   14 KDLKVGVPRISNLQLEQPTENGPNTIASSNKVKSSEINSQKDDEPQQTKKLELNSEKLNAGLRKQAADIAGVITNGNDSPIESVVFDTPNGLFKVSGTKEKLIYDHNEIPSLELSLKRSREDGD--TGTHRHDRNVLRHSDLHSAFSRYKSASTANQASTG 490
            KDL++G PR  N   +           SS   +S +   ++++ P Q    E   E L      +AAD+ G +    D+   +   + PN   KV   K+K     N +PSLELSLKRSR  GD         RNVLR SDL SAF+RY +   +NQ  TG
Sbjct:  310 KDLEIGSPRNLNTAYQ-----------SSPNERSIKPTDRRNEYPLQNNSKEAAMENLEES-SVRAADLIGSMAKNMDAQQAARAANAPNCSSKVPEGKDK--NRDNIMPSLELSLKRSRSTGDGANAIQEEQRNVLRRSDL-SAFTRYHTPVASNQGGTG 455          

HSP 2 Score: 55.8398 bits (133), Expect = 1.982e-22
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  490 GMVGSCSPLDNSSEAAKTNSIQNCQSNLSSTPPSQHSNVSNNNSDVGLTT 639
            G +GSCS  DNSSEA KT+S  N +SN  + P  Q SN S+NN+D+G TT
Sbjct:  455 GFMGSCSLHDNSSEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTT 504          
BLAST of CF417670 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 6.640e-15
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query:  490 GMVGSCSPLDNSSEAAKTNSIQNCQSNLSSTPPSQHSNVSNNNSDVGLTTNASST 654
            G  GSCSP DNSSEA KT+S    +SN  +    Q SN S+NN+D+G +T  + T
Sbjct:  483 GFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAIT 537          

HSP 2 Score: 50.447 bits (119), Expect = 6.640e-15
Identity = 45/173 (26.01%), Postives = 75/173 (43.35%), Query Frame = 2
Query:   14 KDLKVGVPRISNLQLEQ--------PTENGPNTIASSNKVKSSEINSQKDDEPQQTKKLELNSEKLNAGLRKQ------AADIAGVITNGNDSPIESVVFDTPNGLFKVSGTKEKLIYDHNEIPSLELSLKRSREDGDTGTHRHDRNVLRHSDLHSAFSRYKSASTANQASTG 490
            K L++G PR S+++ +         PTE    T+   +K  + E +S+       T+ ++L S    +   KQ      A D +  + +GND   +S++                      ++ S EL LKR +  G       +RN+L+ SDL SAF+RY +   +NQ   G
Sbjct:  335 KYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKT-TRETDSRNTQNEPTTQTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLI----------------------DMTSEELGLKRLKTTGSATEIHDERNILKRSDL-SAFTRYHTTVASNQGGAG 483          
BLAST of CF417670 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 6.640e-15
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query:  490 GMVGSCSPLDNSSEAAKTNSIQNCQSNLSSTPPSQHSNVSNNNSDVGLTTNASST 654
            G  GSCSP DNSSEA KT+S    +SN  +    Q SN S+NN+D+G +T  + T
Sbjct:  483 GFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAIT 537          

HSP 2 Score: 50.447 bits (119), Expect = 6.640e-15
Identity = 45/173 (26.01%), Postives = 75/173 (43.35%), Query Frame = 2
Query:   14 KDLKVGVPRISNLQLEQ--------PTENGPNTIASSNKVKSSEINSQKDDEPQQTKKLELNSEKLNAGLRKQ------AADIAGVITNGNDSPIESVVFDTPNGLFKVSGTKEKLIYDHNEIPSLELSLKRSREDGDTGTHRHDRNVLRHSDLHSAFSRYKSASTANQASTG 490
            K L++G PR S+++ +         PTE    T+   +K  + E +S+       T+ ++L S    +   KQ      A D +  + +GND   +S++                      ++ S EL LKR +  G       +RN+L+ SDL SAF+RY +   +NQ   G
Sbjct:  335 KYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKT-TRETDSRNTQNEPTTQTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLI----------------------DMTSEELGLKRLKTTGSATEIHDERNILKRSDL-SAFTRYHTTVASNQGGAG 483          
The following BLAST results are available for this feature:
BLAST of CF417670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PRR37_ORYSI3.140e-2335.40Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSJ1.982e-2235.40Two-component response regulator-like PRR37 OS=Ory... [more]
PRR73_ORYSJ6.640e-1549.09Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI6.640e-1549.09Two-component response regulator-like PRR73 OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-600 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417670 ID=CF417670; Name=CF417670; organism=Citrus sinensis; type=EST; length=659bp
TGTTGAAACGGACAAAGACTTGAAGGTAGGAGTACCTAGAATTTCAAATT
TGCAGCTTGAACAGCCTACTGAAAATGGACCTAACACAATAGCAAGTAGC
AACAAAGTGAAGTCTTCTGAAATTAATTCTCAGAAAGATGATGAGCCACA
ACAGACAAAAAAGCTGGAGCTCAACAGTGAGAAGCTGAATGCTGGTCTGA
GAAAACAAGCTGCTGATATAGCAGGTGTCATCACTAATGGTAACGATTCT
CCTATTGAGAGTGTAGTTTTTGACACCCCAAACGGTCTCTTCAAGGTCTC
TGGAACGAAAGAAAAGCTCATCTATGACCATAATGAAATACCTTCCCTTG
AGCTTAGTTTGAAGAGGTCGAGAGAAGATGGAGATACTGGAACCCATCGA
CATGACCGAAATGTTTTGAGGCATTCGGACCTGCACTCGGCTTTTTCAAG
ATATAAATCTGCTTCAACTGCTAATCAGGCTTCCACAGGGGAATGGTAGG
TAGCTGTTCTCCACTTGATAATAGTTCTGAGGCAGCAAAAACAAATTCAA
TACAAAACTGTCAATCAAATCTAAGCAGCACACCCCCCAGTCAGCATTCC
AATGTCAGTAATAATAACAGTGACGTGGGTTTAACTACCAATGCTTCTTC
CACCAATCC
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