CF417675

Overview
NameCF417675
Unique NameCF417675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9730 contig Csv1_Contig9730:615..1175. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.197e-60
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 345
            AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN+KAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL SFRSNP+N
Sbjct:  164 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALASFRSNPTN 278          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 9.231e-59
Identity = 109/115 (94.78%), Postives = 111/115 (96.52%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 345
            AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN  KAWDDHWIFW GPF+GALAAAAYHQYILRAAAIKALGSFRSNPSN
Sbjct:  168 AEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALGSFRSNPSN 282          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 9.231e-59
Identity = 107/115 (93.04%), Postives = 112/115 (97.39%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 345
            AE+IGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN  + WDDHWIFWVGPFVGALAAAAYHQY+LRAAAIKALGSFRSNP+N
Sbjct:  168 AELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALGSFRSNPTN 282          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.057e-58
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 345
            AEIIGTFVLVYTVFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN+KAWDD WIFWVGPF+GALAAAAYHQYILRA+AIKALGSFRSN +N
Sbjct:  166 AEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNATN 280          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.056e-54
Identity = 101/112 (90.18%), Postives = 106/112 (94.64%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSN 336
            AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSFG AVI+NNDKAWDD WI+WVGPFVGA  AA YHQYILR +AIKALGSFRSN
Sbjct:  175 AEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSN 286          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 102/112 (91.07%), Postives = 104/112 (92.86%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSN 336
            AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIYN DK WDDHWIFWVGP VGA  AA YHQYILRA AIKALGSFRSN
Sbjct:  178 AEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALGSFRSN 289          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.073e-54
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSN 336
            AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+NN+KAW +HWIFWVGPFVGA  AA YHQYILRA AIKALGSFRSN
Sbjct:  178 AEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALGSFRSN 289          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.014e-54
Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRS 333
            AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN+KAWDD WIFWVGP +GA AAA YHQ+ILRAAAIKALGSF S
Sbjct:  173 AEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSFGS 283          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.846e-54
Identity = 100/113 (88.50%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNP 339
            AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN DKAWD HWIFWVGPF GA  AA YHQ++LRA AIKALGSFRS P
Sbjct:  172 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALGSFRSQP 284          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.846e-54
Identity = 99/112 (88.39%), Postives = 104/112 (92.86%), Query Frame = 1
Query:    1 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSN 336
            AEI+GTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAV+YN DK WDDHWIFWVGP +GA  AA YHQYILRA AIKALGSFRSN
Sbjct:  180 AEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALGSFRSN 291          
The following BLAST results are available for this feature:
BLAST of CF417675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
PIP28_ARATH2.197e-6097.39Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP26_ORYSJ9.231e-5994.78Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA9.231e-5993.04Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP27_ARATH2.057e-5893.91Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP27_MAIZE1.056e-5490.18Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP21_MAIZE1.802e-5491.07Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP21_ORYSJ3.073e-5491.07Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP24_ARATH4.014e-5491.89Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP25_ARATH6.846e-5488.50Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_MAIZE6.846e-5488.39Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-605 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417675 ID=CF417675; Name=CF417675; organism=Citrus sinensis; type=EST; length=562bp
GCTGAGATTATTGGTACCTTCGTGCTTGTTTACACAGTCTTCTCGGCCAC
AGACCCCAAGAGAAGCGCTCGTGACTCTCACGTGCCCGTTTTGGCTCCAC
TTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATC
ACTGGAACGGGCATCAACCCTGCTAGGAGCTTTGGTGCTGCTGTTATCTA
CAACAATGACAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGTCCTT
TCGTTGGAGCATTGGCTGCAGCGGCATACCACCAGTACATCTTGAGGGCT
GCTGCTATCAAGGCTTTGGGATCATTCCGCAGCAACCCTTCAAACTAAGA
AAGCAAATTATGATGAATATGAACCACCAACCAGAATAGCTTTATTTATC
TCTTTTTCCTTTCTCTCTTTCTGTTATTTGTTCGCTTGTGTCTATTATGA
GATGATGTTTGCTATGATAATTATGACCCTTCTCTTTATTTTTCCATTTC
ATATTTTGATTGAGTAGCTATAGCTTTGTCTCCGTGAATCATTGTTAATG
AGTAGTGGTGAT
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