CF417682

Overview
NameCF417682
Unique NameCF417682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig477 contig Csv1_Contig477:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.735e-65
Identity = 108/130 (83.08%), Postives = 119/130 (91.54%), Query Frame = 2
Query:    2 SIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPE 391
            S+GRHWPAYKA GSC  CSYTGT+ E KCL NCGEASQRWYHVPRSWLKP+GNLLVVFEEWGG+PNGI+LVRRE+DSVCA +YEWQ TL+N+QLHASGKVNKPL PKAHL CGPGQKI ++KFASFGTPE
Sbjct:  660 SLGRHWPAYKAVGSCSECSYTGTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLLVVFEEWGGDPNGITLVRREVDSVCADIYEWQSTLVNYQLHASGKVNKPLHPKAHLQCGPGQKITTVKFASFGTPE 789          

HSP 2 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 3
Query:  297 KSTNP*GPKLI*CVALGRKLNQLSLLALEHQKGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAIC 563
            K   P  PK       G+K+  +   +    +G CGSYRQGSCHA HSYDAF +LCVGQN C+VTVAPEMFGGDPCP++MK+LAVEA+C
Sbjct:  758 KVNKPLHPKAHLQCGPGQKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCVGQNWCSVTVAPEMFGGDPCPNVMKKLAVEAVC 846          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.430e-60
Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = 2
Query:    2 SIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPE 391
            S+GRHWPAYK+SGSC  C+YTG + EKKCL+NCGE SQRWYHVPRSWL PTGNLLVVFEEWGG+P GI+LV+REI SVCA +YEWQP L+NWQ   SGK ++PLRPKAHL C PGQKI SIKFASFGTPE
Sbjct:  648 SLGRHWPAYKSSGSCSVCNYTGWFDEKKCLTNCGEGSQRWYHVPRSWLYPTGNLLVVFEEWGGDPYGITLVKREIGSVCADIYEWQPQLLNWQRLVSGKFDRPLRPKAHLKCAPGQKISSIKFASFGTPE 777          

HSP 2 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 3
Query:  297 KSTNP*GPKLI*CVALGRKLNQLSLLALEHQKGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAIC 563
            K   P  PK     A G+K++ +   +    +GVCG+++QGSCHA  SYDAF++ CVG+  C+V V PE FGGDPC +++K+L+VEAIC
Sbjct:  746 KFDRPLRPKAHLKCAPGQKISSIKFASFGTPEGVCGNFQQGSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAIC 834          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.592e-51
Identity = 92/130 (70.77%), Postives = 102/130 (78.46%), Query Frame = 2
Query:    2 SIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPE 391
            SIGR+WPAYKASGSCG C Y GTY EKKCLSNCGEASQRWYHVPRSWL PTGN LVV EEWGG+P GIS+V+R + SVCA + E QPT+ NW+  A G      RPK HL C PGQK+  IKFASFGTP+
Sbjct:  646 SIGRYWPAYKASGSCGSCDYRGTYNEKKCLSNCGEASQRWYHVPRSWLIPTGNFLVVLEEWGGDPTGISMVKRSVASVCAEVEELQPTMDNWRTKAYG------RPKVHLSCDPGQKMSKIKFASFGTPQ 769          

HSP 2 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 3
Query:  345 GRKLNQLSLLALEHQKGVCGSYRQGSCHAFHSYDAFQRL-----CVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAIC 563
            G+K++++   +    +G CGS+ +GSCHA  SYDAF++      CVGQ  C+V VAPE+FGGDPCP  MK+LAVEAIC
Sbjct:  754 GQKMSKIKFASFGTPQGTCGSFSEGSCHAHKSYDAFEQEGLMQNCVGQEFCSVNVAPEVFGGDPCPGTMKKLAVEAIC 831          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.934e-46
Identity = 82/129 (63.57%), Postives = 95/129 (73.64%), Query Frame = 2
Query:    5 IGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPE 391
            IGR+WP YKASG+CG C Y G Y E KC +NCG++SQRWYHVPRSWL PTGNLLV+FEEWGG+P GIS+V+R I SVCA + EWQP++ NW      K       K HL C  GQKI  IKFASFGTP+
Sbjct:  647 IGRYWPGYKASGNCGTCDYRGEYDETKCQTNCGDSSQRWYHVPRSWLSPTGNLLVIFEEWGGDPTGISMVKRSIGSVCADVSEWQPSMKNWHTKDYEKA------KVHLQCDNGQKITEIKFASFGTPQ 769          

HSP 2 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  345 GRKLNQLSLLALEHQKGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG 566
            G+K+ ++   +    +G CGSY +G CHA  SYD F + CVGQ  C V+V PE+FGGDPCP  MK+  VEAICG
Sbjct:  754 GQKITEIKFASFGTPQGSCGSYTEGGCHAHKSYDIFWKNCVGQERCGVSVVPEIFGGDPCPGTMKRAVVEAICG 827          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.140e-43
Identity = 77/129 (59.69%), Postives = 96/129 (74.42%), Query Frame = 2
Query:    2 SIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTP 388
            SIGR+W A+ A+G C +CSYTGTY   KC + CG+ +QRWYHVPR+WLKP+ NLLV+FEE GGNP+ +SLV+R +  VCA + E+ P + NWQ+ + GK     RPK HL C PGQ I SIKFASFGTP
Sbjct:  660 SIGRYWTAF-ATGDCSHCSYTGTYKPNKCQTGCGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRSVSGVCAEVSEYHPNIKNWQIESYGKGQTFHRPKVHLKCSPGQAIASIKFASFGTP 787          

HSP 2 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  345 GRKLNQLSLLALEHQKGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAIC 563
            G+ +  +   +     G CGSY+QG CHA  SY   +R CVG+  C VT++   FG DPCP+++K+L VEA+C
Sbjct:  773 GQAIASIKFASFGTPLGTCGSYQQGECHAATSYAILERKCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVC 845          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.262e-36
Identity = 71/129 (55.04%), Postives = 89/129 (68.99%), Query Frame = 2
Query:    2 SIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTP 388
            SIGR+W AY A G C  C YTG+Y   KC + CG+ +QRWYHVPRSWL+PT NLLVVFEE GG+ + I+L +R +  VCA + E+ P + NWQ+ + G+       K HL C PGQ I +IKFASFGTP
Sbjct:  653 SIGRYWTAY-AEGDCKGCHYTGSYRAPKCQAGCGQPTQRWYHVPRSWLQPTRNLLVVFEELGGDSSKIALAKRTVSGVCADVSEYHPNIKNWQIESYGEPEFH-TAKVHLKCAPGQTISAIKFASFGTP 779          

HSP 2 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  339 ALGRKLNQLSLLALEHQKGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAIC 563
            A G+ ++ +   +     G CG+++QG CH+ +S    ++ C+G   C V ++P  FGGDPCP +MK++AVEA+C
Sbjct:  763 APGQTISAIKFASFGTPLGTCGTFQQGECHSINSNSVLEKKCIGLQRCVVAISPSNFGGDPCPEVMKRVAVEAVC 837          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.145e-35
Identity = 63/135 (46.67%), Postives = 80/135 (59.26%), Query Frame = 2
Query:    2 SIGRHWPAYKA-SGSCGY-CSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDS-VCAYMYEWQPTLIN-WQLHASGKVNKPLRPKAHLMCG-PGQKIKSIKFASFGTPE 391
            SIGR+WP   A +G C   C Y G+Y   KCL NCG+ SQ  YHVPRSWLKP+GN+LV+FEE GG+P  IS   ++  S +C  + +  P  ++ W   +        RP   L C    Q I SIKFASFGTP+
Sbjct:  661 SIGRYWPTSIAGNGGCTESCDYRGSYRANKCLKNCGKPSQTLYHVPRSWLKPSGNILVLFEEMGGDPTQISFATKQTGSNLCLTVSQSHPPPVDTWTSDSKISNRNRTRPVLSLKCPISTQVIFSIKFASFGTPK 795          

HSP 2 Score: 59.6918 bits (143), Expect = 2.145e-35
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 3
Query:  390 KGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAIC 563
            KG CGS+ QG C++  S    Q+ C+G   C V V+  +F G+PC  ++K LAVEA C
Sbjct:  795 KGTCGSFTQGHCNSSRSLSLVQKACIGLRSCNVEVSTRVF-GEPCRGVVKSLAVEASC 851          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGA12_ARATH (Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.826e-33
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 2
Query:    2 SIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRR 220
            +IGRHWPAY A G C  CSY GT+TEKKCLSNCGEASQRWYHVPRSWLKPT NL++V EEWGG PNGISLV+R
Sbjct:  653 NIGRHWPAYTARGKCERCSYAGTFTEKKCLSNCGEASQRWYHVPRSWLKPTNNLVIVLEEWGGEPNGISLVKR 725          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 2
Query:    2 SIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRR 220
            +IGRHWPAY A G+CG C+Y G Y EKKCLS+CGE SQRWYHVPRSWLKP GNLLV+FEEWGG+P+GISLV+R
Sbjct:  652 NIGRHWPAYTARGNCGRCNYAGIYNEKKCLSHCGEPSQRWYHVPRSWLKPFGNLLVIFEEWGGDPSGISLVKR 724          
BLAST of CF417682 vs. ExPASy Swiss-Prot
Match: BGAL_MALDO (Beta-galactosidase OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.495e-30
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 2
Query:    2 SIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRR 220
            S+GRHWP Y A GSCG CSY GTY +KKC ++CGE SQRWYH+PRSWL PTGNLLVVFEEWGG+P+ ISLV R
Sbjct:  650 SVGRHWPGYIARGSCGDCSYAGTYDDKKCRTHCGEPSQRWYHIPRSWLTPTGNLLVVFEEWGGDPSRISLVER 722          
The following BLAST results are available for this feature:
BLAST of CF417682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
BGAL1_ARATH9.735e-6583.08Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_SOLLC9.430e-6077.69Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL_ASPOF3.592e-5170.77Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGAL2_ORYSJ5.934e-4663.57Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]
BGAL3_ARATH6.140e-4359.69Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]
BGAL5_ORYSJ4.262e-3655.04Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL8_ARATH2.145e-3546.67Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGA12_ARATH9.826e-3380.82Beta-galactosidase 12 OS=Arabidopsis thaliana GN=B... [more]
BGAL2_ARATH6.369e-3278.08Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_MALDO3.495e-3075.34Beta-galactosidase OS=Malus domestica PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-612 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417682 ID=CF417682; Name=CF417682; organism=Citrus sinensis; type=EST; length=687bp
GAGTATCGGACGTCACTGGCCTGCTTACAAGGCATCTGGTTCTTGCGGTT
ATTGTAGTTATACGGGAACATATACTGAGAAGAAATGCTTAAGCAACTGT
GGAGAGGCCTCTCAAAGATGGTACCATGTTCCTAGGTCGTGGCTAAAACC
AACAGGAAACTTGTTGGTTGTATTTGAAGAATGGGGTGGCAATCCTAATG
GAATTTCTTTGGTTAGAAGAGAAATAGACAGTGTATGTGCTTATATGTAT
GAGTGGCAGCCAACCCTTATCAATTGGCAGCTGCATGCCTCTGGCAAAGT
CAACAAACCCTTGAGGCCCAAAGCTCATTTGATGTGTGGCCCTGGGCAGA
AAATTAAATCAATTAAGTTTGCTAGCTTTGGAACACCAGAAAGGTGTTTG
TGGAAGCTACCGTCAGGGAAGCTGTCACGCTTTTCACTCTTATGATGCTT
TCCAAAGGCTATGCGTTGGGCAGAACATGTGCACGGTAACTGTGGCACCT
GAAATGTTTGGTGGAGATCCATGCCCCAGCATCATGAAGCAACTTGCTGT
GGAGGCCATTTGCGGCTGATAGACCTGCAACGTCCAGGGTGAAAGAAATG
GNAACAAAGGAGGTCCCATTTCTTCATGCCTGTCATCTGATTTTTTGTTG
CAGTATAGTATTTTTCGGCTTCTAGATCACTCCAACC
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