CF417690

Overview
NameCF417690
Unique NameCF417690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7928 contig Csv1_Contig7928:270..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.715e-43
Identity = 82/103 (79.61%), Postives = 95/103 (92.23%), Query Frame = 3
Query:    6 ELPRPPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQEGED-VLMKDGFF--ASANVGVSPY 305
            E+P+ P  +RPPEKRQRVPSAYNRFIK+EIQRIKAGNPDI+HREAFSAAAKNWAHFPHIHFGLVPD+QPVKK N+ QQEGED ++MK+GF+  A+ANVGV+PY
Sbjct:  127 EIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFYAPAAANVGVTPY 229          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.530e-42
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 3
Query:    6 ELPRPPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQEGEDVLM-KDGFFAS-ANVGVS 299
            E+PRPP  +RPPEKRQRVPSAYNRFIK+EIQRIKAGNPDI+HREAFSAAAKNWAHFPHIHFGL+ DH P KKANVRQQEGED +M ++GF+ S ANVGV+
Sbjct:  139 EMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFYGSAANVGVA 238          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.733e-35
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = 3
Query:   30 SRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQEGE--DVLMKDGFF-------ASANVGVSPY 305
            +RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDI+HREAFSAAAKNWAHFPHIHFGL+PDHQ +KK ++  Q+ +  D L+K+G +       A+AN+GV+PY
Sbjct:  213 NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQGLKKTSLLPQDHQRKDGLLKEGLYAAAAAAAAAANMGVAPY 313          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.723e-34
Identity = 74/110 (67.27%), Postives = 86/110 (78.18%), Query Frame = 3
Query:    6 ELPR--PPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQEGEDVLMKDGFF--------ASANVGVSPY 305
            ELP+  P + +RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDI+HREAFSAAAKNWAHFPHIHFGL+PD Q  KK    Q   ED+L+KD  +        A+AN+GV+P+
Sbjct:  148 ELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD-QGFKKTFKPQDGSEDILLKDSLYAAAAAAAAAAANMGVTPF 256          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.723e-34
Identity = 74/110 (67.27%), Postives = 86/110 (78.18%), Query Frame = 3
Query:    6 ELPR--PPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQEGEDVLMKDGFF--------ASANVGVSPY 305
            ELP+  P + +RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDI+HREAFSAAAKNWAHFPHIHFGL+PD Q  KK    Q   ED+L+KD  +        A+AN+GV+P+
Sbjct:  148 ELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD-QGFKKTFKPQDGSEDILLKDSLYAAAAAAAAAAANMGVTPF 256          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 3
Query:   21 PATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQE--GEDVLMKDGFFASA----------NVGVSPY 305
            P+ +R  EKRQRVPSAYNRFIKDEIQRIKA NPDITHREAFSAAAKNWAHFPHIHFGL+PD Q +KK  ++ Q+  GE +L KDG +A+A          ++GV+P+
Sbjct:  161 PSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPD-QGLKKTGIQSQDGAGECMLFKDGLYAAAAAAAAATAASSMGVTPF 266          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 3
Query:   21 PATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQE--GEDVLMKDGFFASA----------NVGVSPY 305
            P+ +R  EKRQRVPSAYNRFIKDEIQRIKA NPDITHREAFSAAAKNWAHFPHIHFGL+PD Q +KK  ++ Q+  GE +L KDG +A+A          ++GV+P+
Sbjct:  161 PSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPD-QGLKKTGIQSQDGAGECMLFKDGLYAAAAAAAAATAASSMGVTPF 266          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.254e-25
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 3
Query:   30 SRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKK 221
            +RPPEKRQRVPSAYNRFIK+EI+RIKA NPDI+HREAFS AAKNWAH+P+IHFGL P H+  KK
Sbjct:  123 ARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEGGKK 186          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 3
Query:    6 ELPRPPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPD 203
            E PR P   RPPEKRQRVPSAYNRFIK+EIQRIKA NP+I+HREAFS AAKNWAHFPHIHFGL  D
Sbjct:   99 EAPRMPPI-RPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLD 163          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.141e-24
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 3
Query:   30 SRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLV 197
            +RPPEKRQRVPSAYN+FIK+EIQRIKA NPDI+HREAFS AAKNWAHFPHIHFGL+
Sbjct:   99 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 154          
The following BLAST results are available for this feature:
BLAST of CF417690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB1_ARATH7.715e-4379.61Axial regulator YABBY 1 OS=Arabidopsis thaliana GN... [more]
YAB3_ARATH8.530e-4281.00Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB3_ORYSJ7.733e-3570.30Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSJ1.723e-3467.27Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI1.723e-3467.27Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB5_ORYSJ1.783e-3164.49Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI1.783e-3164.49Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB6_ORYSJ7.254e-2579.69Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB2_ARATH2.757e-2481.82Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB5_ARATH6.141e-2487.50Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-620 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417690 ID=CF417690; Name=CF417690; organism=Citrus sinensis; type=EST; length=588bp
TTGATGAGCTTCCAAGGCCTCCAGCTACCAGCAGACCACCAGAGAAGAGA
CAAAGAGTCCCCTCTGCGTACAACCGATTCATCAAGGACGAGATCCAACG
CATTAAGGCTGGAAACCCTGATATAACCCACAGAGAAGCCTTCAGTGCGG
CTGCTAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTTGTGCCT
GACCATCAGCCGGTCAAGAAGGCTAACGTGCGCCAGCAGGAAGGAGAAGA
TGTTCTGATGAAAGATGGTTTTTTCGCTTCAGCAAACGTGGGTGTCTCGC
CTTATTAAGAATGGCATGCCATTGCATATTGCTGGTTGTTTTAAATCTAA
GTTATGTCCTTTGTTATCTGTGGACTGTGTCGTCCTTTATCGCTGCAGTA
GATTCTAGCTAGTGGTTGAGTTTAACAACACTCTGTTTAATTAAGTACTT
TAATTTAATCCAATCTGTGCTTTTCAAGGTCGTTTTCATGTTTATAGTTC
TCGTCTAGTGTGTTAGTTGCCTTAATTACATATGTCTACTTTTAGACTTT
CTTATGAATTTTGCAAGCTAATCGGGCAGCTTATTGCT
back to top