CF417713

Overview
NameCF417713
Unique NameCF417713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417713 vs. ExPASy Swiss-Prot
Match: BUD13_CAEEL (BUD13 homolog OS=Caenorhabditis elegans GN=R08D7.1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 73/238 (30.67%), Postives = 99/238 (41.60%), Query Frame = 3
Query:   63 PKSAHSCGLNSDLSPPHKRRAGNDSPSPELREKPARESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRARNDTPELEPGLKPAGEDADL----SPPRQPRKHHNTPSPEPEISVSRRVERGSSNRGSDLSPRRRNKKDPTSGKPGLPVVPDLSPPRKIQKDEKGI--------------------QRTGLITGKDISEEISNRKKEDLLRFQELDPSVTGLGAEAVY 704
            PK      L+ D SPP  +R  +DS +   R    R  SD SPPR  R R+ +               D D SPPR+RR  +D     P  K   E        SPPR  R  H++ +  P         R  S R SD SP RR    P   +       DLSPPRK +K E+                      +R+GL + +D+ EE    + ++   F+E+D SV+G  A+ VY
Sbjct:   90 PKVIKPEPLSPDNSPPRGKRQRHDSDNSPPRPSRKRNDSDNSPPRPSRNRHDS---------------DKDNSPPRRRRHDSDNSPPRPSRKIREESPSARNRRSPPRTRRDRHDSDNSPP---------RNRSRRDSDNSPPRRRPSSPARRRKD----DDLSPPRKSRKIEEPKKIKKEEPDSDTETSGRTLEGKRSGLQSARDLKEESDKLRAKNSKMFEEMDTSVSGRFADTVY 299          
BLAST of CF417713 vs. ExPASy Swiss-Prot
Match: BUD13_CHICK (BUD13 homolog OS=Gallus gallus GN=BUD13 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 68/189 (35.98%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   90 NSDLSPPHK---RRAGNDSPSPELREKPARESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRARNDTPELEPGLKPAGEDA-DLSPPRQPRKHHNTPSPEPEISVSRRVERGSSNRGSDLSPRRRNKKDPTSGKPGLPVVPDLSPPRKIQKDEKGIQRTGLITGKDISEEISNRKKED 644
            +SD+S P K   R+  +DSP      +   +S DLSPPRQ R    +  P  E++ G       DLSPP  RR R+D+P+L P  +   +D+ DLSPPR  RK H++    P++S  RR    S     DLSP RR + D           PD SPPRK + D   +      T  D+S +   R   D
Sbjct:  106 SSDVSVPAKATTRQQRHDSPDNSPPRRVRHDSPDLSPPRQERNNSASLLPRKERQHG-----SPDLSPP--RRKRHDSPDLSPPRRKRHDDSPDLSPPR--RKRHDS----PDLSPPRRKRHDS----PDLSPPRRQRHDS----------PDPSPPRKKRHDSPDLSPQEQQTTPDLSLQRKKRYDSD 267          

HSP 2 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 66/198 (33.33%), Postives = 102/198 (51.52%), Query Frame = 3
Query:   27 QNRRDTSLHDSDPKSAHSCGLNSDLSPPHKRRAGNDSPSPELREKPARESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRARNDTPELEPGLKPAGEDADLSPPRQPR-----------KHHNTP--SPE-----PEISVSRRVERGSSNRGSDLSPRRRNKKDPTSGKPGLPVVPDLSPPRKIQKD 566
            Q R D+  +    +  H    + DLSPP + R  N+S S   R++    S DLSPPR  R+R+ +P   P ++  K      DLSPPR++R  +D+P+L P  +   +  DLSPPR+ R           K H++P  SP+     P++S+ R+ +R  S+  S  S R+R  + P   KP      D SP +K+++D
Sbjct:  119 QQRHDSPDNSPPRRVRHD---SPDLSPPRQER--NNSASLLPRKERQHGSPDLSPPR--RKRHDSPDLSPPRR--KRHDDSPDLSPPRRKR--HDSPDLSPPRRKRHDSPDLSPPRRQRHDSPDPSPPRKKRHDSPDLSPQEQQTTPDLSLQRK-KRYDSDPDSSPSLRKR-ARSPGHKKPSR--TKDASPVKKLRRD 301          
BLAST of CF417713 vs. ExPASy Swiss-Prot
Match: BUD13_MOUSE (BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 3
Query:   96 DLSPPHKRRAGNDSPSPELREKPARESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRARNDTPELEPGLKPAGEDADLSPPRQPRKHHNTPSPEPEISVSRRVE----RGSSNRGSDLSPRR 482
            D SPP K R  +D+P P    K   ++ D SPPR  + R+ TP P P +K   +R    D SPPR  R R+DTP+L P  +   +  DLSPPR+ R  H+TP P P   V   ++    R S    S +SPRR
Sbjct:  133 DTSPPRKAR--HDTPDPSPPRKARHDTPDTSPPR--KARHDTPDPSPPRK---ARHDTPDPSPPR--RVRHDTPDLSPPRRVRHDTPDLSPPRRVR--HDTPDPSPPRRVRHDLDASPPRKSHRNSSAVSPRR 254          

HSP 2 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 64/208 (30.77%), Postives = 99/208 (47.60%), Query Frame = 3
Query:   51 HDSDPKSAHSCGLNSDLSPPHKRRAGNDSPSPELREKPARESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRAR---NDTPELE-PGLKPAGEDADLSPPRQPRKHHNTPSPEPEISVSRRVERGSSNRGSDLSPRRRNKKDPTSGKPGLPVVPDLSPPRKIQKDEKGI------QRTGLITGKDISEEISNRKKED 644
            H+  P +A            H RRA ++SP  EL +  + ++++ +P +   +    PS  P          DSDLSPPRKR+A+       +L+  G+     D+DLSPPR+ +K+      + ++S  R   R  S+  SDLSP RR ++  +S         DLSPPR+  +  K         +TGL+T  D+  E    KK+D
Sbjct:  269 HNHSPTAAQHRRTLDSSGTQHLRRAHHESPDLELHKAKSSKAAERAPSKAASQSGLGPS-HPSLSTNSKYEHDSDLSPPRKRQAKAHFEAKKQLDSKGVYQKASDSDLSPPRK-KKNSGHQDSDSDLSPPRNRPRRQSS-DSDLSPPRRRQRTKSSDS-------DLSPPRRSPRPGKKTAHMYSGAKTGLVT--DVQREHQELKKQD 464          

HSP 3 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 54/132 (40.91%), Postives = 68/132 (51.52%), Query Frame = 3
Query:  171 ESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRARNDTPELEPGLKPAGEDADLSPPRQPRKHHNTPSPEPEISVSRRVERGSSNRGSDLSPRRRNKKDPTSGKPGLPVVPDLSPPRKIQKD 566
            +  D SPPR  R R+ TP   P +K   +R    D SPPRK  AR+DTP+  P  K   +  D SPPR+ R  H+TP P P     RRV   +     DLSP RR + D           PDLSPPR+++ D
Sbjct:  117 DDQDSSPPR--RVRHDTPDTSPPRK---ARHDTPDPSPPRK--ARHDTPDTSPPRKARHDTPDPSPPRKAR--HDTPDPSPP----RRVRHDTP----DLSPPRRVRHD----------TPDLSPPRRVRHD 221          

HSP 4 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 58/172 (33.72%), Postives = 81/172 (47.09%), Query Frame = 3
Query:    3 DLSPPQQWQNRRDTSLHDSDPKSAHSCGLNSDLSPPHKRRAGNDSPSPELREKPARESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRARNDTPELEPGLKPAGEDADLSPPRQPRKHHNTPSPEPEISVSRRVERGSSNRGS--DLSPRRRNKKDPTSGK 512
            D SPP++   R DT       K+ H      D SPP K R  +D+P      K   ++ D SPPR  + R+ TP P P +++   R    DLSPPR  R R+DTP+L P  +   +  D SPPR+ R   +   P      S  V     + GS    SPR+ +   PT+ +
Sbjct:  120 DSSPPRRV--RHDTPDTSPPRKARHD---TPDPSPPRKAR--HDTPDTSPPRKARHDTPDPSPPR--KARHDTPDPSPPRRV---RHDTPDLSPPR--RVRHDTPDLSPPRRVRHDTPDPSPPRRVRHDLDASPPRKSHRNSSAVSPRRGHHGSLGTSSPRQTHNHSPTAAQ 277          
BLAST of CF417713 vs. ExPASy Swiss-Prot
Match: BUD13_RAT (BUD13 homolog OS=Rattus norvegicus GN=Bud13 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 63/208 (30.29%), Postives = 93/208 (44.71%), Query Frame = 3
Query:   51 HDSDPKSAHSCGLNSDLSPPHKRRAGNDSPSPELREKPARESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRAR---NDTPELE-PGLKPAGEDADLSPPRQPRKHHNTPSPEPEISVSRRVERGSSNRGSDLSPRRRNKKDPTSGKPGLPVVPDLSPPRKIQKDEKGI------QRTGLITGKDISEEISNRKKED 644
            H+  P +A            H RRA +DSP  EL +  + ++++  P  +   +     P P   +      DSDLSPPRKR+A+       +L+  G+     D+DLSPPR+  K  +  S         R  R SS+  SDLSP RR ++  +S         DLSP R+  +  K         +TGL+   D+  E    KK+D
Sbjct:  268 HNHSPAAAQHRRTLDSSGAQHHRRARHDSPDLELPKAKSSKAAE-RPSSKTVSQSGLGPPHPSLSMNSKYEHDSDLSPPRKRQAKAHFGAKKQLDSKGVCQKASDSDLSPPRKNSKSGHQDSDSDLSPPRNRPRRQSSD--SDLSPPRRRQRTKSSDS-------DLSPSRRSPRSGKKTPHMYSGAKTGLVA--DVQREHQELKKQD 463          
BLAST of CF417713 vs. ExPASy Swiss-Prot
Match: BUD13_HUMAN (BUD13 homolog OS=Homo sapiens GN=BUD13 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 52/161 (32.30%), Postives = 74/161 (45.96%), Query Frame = 3
Query:   51 HDSD-PKSAHSCGLNSDLSPPHKRRAGNDSPSPELREKPARESSDLSPPRQRRRRYHTPSPEPEQKIGKSRGLDSDLSPPRKRRARNDTPELEPGLKPAGEDADLSPPRQPRKHHNTPSP------EPEISVSRRVERGSSNRGSDLSPRRRNKKDPTSGK 512
            H+ D P + H      D SP   RR  + +P P     P ++  D   P  RR R+ TP P P     +    DSD SPPR  R R+D+ +  P  +   +  D SPPR+P+ + +  SP       P+ S  RR   GSS+     SPRR +   P + +
Sbjct:  109 HNEDLPSNRHFRHDTPDSSP---RRVRHGTPDPS----PRKDRHDTPDPSPRRARHDTPDPSPL----RGARHDSDTSPPR--RIRHDSSDTSPPRRARHDSPDPSPPRRPQHNSSGASPRRVRHDSPDPSPPRRARHGSSDIS---SPRRVHNNSPDTSR 253          
The following BLAST results are available for this feature:
BLAST of CF417713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BUD13_CAEEL4.662e-1730.67BUD13 homolog OS=Caenorhabditis elegans GN=R08D7.1... [more]
BUD13_CHICK1.148e-1535.98BUD13 homolog OS=Gallus gallus GN=BUD13 PE=2 SV=1[more]
BUD13_MOUSE5.699e-1540.60BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1[more]
BUD13_RAT7.703e-1230.29BUD13 homolog OS=Rattus norvegicus GN=Bud13 PE=2 S... [more]
BUD13_HUMAN8.517e-1132.30BUD13 homolog OS=Homo sapiens GN=BUD13 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-643 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417713 ID=CF417713; Name=CF417713; organism=Citrus sinensis; type=EST; length=706bp
CTGATTTATCACCTCCACAACAATGGCAGAATCGCCGTGATACTTCATTG
CATGATTCTGACCCAAAATCTGCTCATTCCTGTGGTTTGAATTCTGATCT
ATCTCCACCACATAAACGACGGGCTGGAAATGACTCACCTTCTCCAGAAC
TCAGAGAGAAGCCTGCCAGAGAAAGTTCCGATTTGTCTCCTCCAAGGCAG
CGGCGGAGACGATATCATACCCCATCACCTGAACCCGAGCAAAAAATTGG
AAAGTCCAGAGGATTGGATTCTGATTTATCTCCGCCTCGGAAACGTAGGG
CTAGGAATGACACACCTGAACTTGAACCTGGTCTTAAACCTGCAGGAGAG
GATGCTGACTTGTCTCCTCCACGTCAGCCACGGAAACACCACAATACTCC
ATCACCTGAACCTGAAATTTCTGTTTCTAGACGAGTTGAACGGGGCTCCT
CTAATCGAGGCAGTGATCTCTCTCCCCGGCGGAGAAATAAGAAGGATCCC
ACTAGTGGTAAACCTGGATTGCCTGTGGTCCCTGACCTTTCTCCACCTAG
GAAGATTCAAAAAGATGAAAAGGGGATTCAAAGAACAGGATTAATTACTG
GAAAAGATATCAGTGAAGAAATTTCTAATAGAAAGAAGGAGGATTTGTTG
AGGTTTCAAGAGCTGGATCCTTCTGTAACTGGACTTGGTGCAGAAGCTGT
ATATCG
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