CF417724

Overview
NameCF417724
Unique NameCF417724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417724 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 6.020e-93
Identity = 163/207 (78.74%), Postives = 194/207 (93.72%), Query Frame = 2
Query:    2 VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFRPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIVMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIK 622
            VKAGVRD++KAKT+  KD+PSLQIV+ADVTEG  KL+E IGDDS+AV+CATGFRPG+D+F PWKVDNFGTVNLV+ACRK+GV +F+L+SSILVNGAAMGQILNPAY+FLN+FGLTL+AKLQAE+YI+KSGINYTI+RPGGL+N+PPTGN+VME EDTLYEG+ISRD VAEVAVEALL  ESS+KVVEI++R +APKRSY+DLF S+K
Sbjct:   73 VKAGVRDVEKAKTSF-KDDPSLQIVRADVTEGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPEDTLYEGSISRDLVAEVAVEALLQEESSFKVVEIVARAEAPKRSYKDLFASVK 278          
BLAST of CF417724 vs. ExPASy Swiss-Prot
Match: YHFK_BACSU (Uncharacterized sugar epimerase yhfK OS=Bacillus subtilis GN=yhfK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 49/147 (33.33%), Postives = 69/147 (46.94%), Query Frame = 2
Query:   92 EGSAKLSEAIGDDSEAVVCATGFRPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV-NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIVMETEDTLYEGTISRDQVAEVAVEAL 529
            EGS +   A     +A++   G            VD  G    +EA    G+ RFI++S++   N     + L P Y+          AK  A++ +  SG+ YTIIRPGGLRNEP TG +       L  G ISRD VA+  + +L
Sbjct:   54 EGSPEEIAAAAKGCDAIIFTAGSGGSTGYDKTLLVDLDGAAKAIEAAAIAGIKRFIMVSALQAHNRENWNEALKPYYV----------AKHYADKILEASGLTYTIIRPGGLRNEPGTGTV--SAAKDLERGFISRDDVAKTVIASL 188          
BLAST of CF417724 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 64/225 (28.44%), Postives = 113/225 (50.22%), Query Frame = 2
Query:   17 RDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG----FRPGWDLFA-------------PWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRN-EPPTGNIVMETEDTLYE---GTISRDQVAEVAVEALLHPESSYKVVEIISRVD---APKRSYEDLFGSI 619
            R L + K +  K N   ++   D+ + +A ++ A+ +  +A+V  T      +PG+D                P +VD  G  N ++A +  GV + +L+ S+   G  +   LN +    N+    L+ K +AEQY+  SGI YTIIR GGL++ +     +++  +D L E    TI+R  VAEV V+AL   E+ +K +++ S+ +    P + ++ LF  +
Sbjct:  106 RGLVRTKESKEKINGEDEVFIGDIRD-TASIAPAV-EGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSM--GGTNINHPLN-SIGNANI----LVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGTGTPTKDFKALFTQV 321          
The following BLAST results are available for this feature:
BLAST of CF417724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2446_ARATH6.020e-9378.74Uncharacterized protein At2g34460, chloroplastic O... [more]
YHFK_BACSU3.058e-1233.33Uncharacterized sugar epimerase yhfK OS=Bacillus s... [more]
Y2766_ARATH5.767e-1128.44Uncharacterized protein At2g37660, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-654 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417724 ID=CF417724; Name=CF417724; organism=Citrus sinensis; type=EST; length=662bp
TGTCAAGGCCGGGGTTCGGGATTTGGACAAGGCTAAAACTACTCTTTCCA
AGGACAACCCATCTCTTCAAATTGTGAAAGCAGATGTGACAGAGGGTTCT
GCCAAACTATCAGAAGCTATAGGCGATGATTCAGAAGCTGTGGTGTGTGC
CACAGGGTTTCGGCCTGGTTGGGATTTGTTTGCTCCTTGGAAGGTTGATA
ATTTTGGCACAGTAAACCTTGTTGAAGCATGCCGGAAAAGAGGCGTTAAC
AGATTCATTCTTATTAGCTCCATTTTAGTCAATGGAGCTGCAATGGGGCA
AATACTAAATCCAGCTTACATTTTTCTGAATGTGTTTGGCCTCACCTTAA
TAGCAAAGCTTCAGGCAGAGCAATACATCAGGAAATCTGGTATTAACTAC
ACGATCATAAGGCCTGGTGGATTGAGAAATGAACCCCCAACTGGAAACAT
TGTCATGGAGACAGAAGATACTCTTTATGAAGGTACCATTTCCAGAGATC
AGGTCGCAGAAGTTGCTGTTGAGGCACTACTTCATCCCGAATCATCTTAC
AAAGTTGTGGAGATCATTTCTCGTGTGGATGCTCCTAAGCGTTCATATGA
GGATCTTTTTGGTTCCATAAAGCAACGATGACTTCATAATCAAAATAAAT
ATGCAGAGGCTA
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