CF417742 | Citrus Genome Database

Overview


Name	CF417742
Unique Name	CF417742
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	660

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RBP9X_DROME (Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.930e-17
Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 2

Query:  257 VSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            +S + L V Y  V     D   V+   P P    +YYFE+ +   G  G + IG T++ F+M R PGW+  S GYHG
Sbjct:  433 LSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHG 509

HSP 2 Score: 47.3654 bits (111), Expect = 1.930e-17
Identity = 18/46 (39.13%), Postives = 30/46 (65.22%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N+ +   F+TKNG  +G  ++D+   L+
Sbjct:  521 GQTYGPTFTTGDVIGCCVNFVNNTCFYTKNGVDLGIAFRDLPTKLY 566

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: YC5C_SCHPO (Uncharacterized protein C1259.12c OS=Schizosaccharomyces pombe GN=SPCC1259.12c PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.596e-16
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            GEA+GP FTT D +G G+N+ ++  F+TKNG+ +G  +K +   L+
Sbjct:  167 GEAYGPEFTTGDIIGCGVNFINRTIFYTKNGAYLGVAFKKVSDVLY 212

HSP 2 Score: 53.1434 bits (126), Expect = 1.596e-16
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 2

Query:  308 HDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            HD   V+A+   P    +YY+EI +   G +G++ +GF  +S +  R PG  A S GYHG
Sbjct:   96 HDAASVKADHAIPSNTSIYYYEIQILSRGKEGKMGVGFCRKSMQTNRLPGCTAESWGYHG 155

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RBP10_DANRE (Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.533e-16
Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 2

Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            ++ +S + L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHG
Sbjct:   53 YIGLSQNNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 132

HSP 2 Score: 45.0542 bits (105), Expect = 4.533e-16
Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+
Sbjct:  144 GQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGVAFTDLPPNLY 189

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RBP10_MOUSE (Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 9.934e-16
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 2

Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHG
Sbjct:   93 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 172

HSP 2 Score: 44.669 bits (104), Expect = 9.934e-16
Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+
Sbjct:  184 GQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLY 229

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RBP10_HUMAN (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 9.944e-16
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 2

Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHG
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 144

HSP 2 Score: 44.669 bits (104), Expect = 9.944e-16
Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+
Sbjct:  156 GQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLY 201

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RBP10_BOVIN (Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 9.944e-16
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 2

Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHG
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 144

HSP 2 Score: 44.669 bits (104), Expect = 9.944e-16
Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+
Sbjct:  156 GQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLY 201

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RANB9_HUMAN (Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.288e-15
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 2

Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHG
Sbjct:  177 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 256

HSP 2 Score: 44.669 bits (104), Expect = 1.288e-15
Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+
Sbjct:  268 GQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLY 313

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RANB9_MOUSE (Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.291e-15
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 2

Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHG
Sbjct:  102 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 181

HSP 2 Score: 44.669 bits (104), Expect = 1.291e-15
Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+
Sbjct:  193 GQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLY 238

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RANB9_DANRE (Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.293e-15
Identity = 28/80 (35.00%), Postives = 41/80 (51.25%), Query Frame = 2

Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            ++ +S + L V Y        D   V+A  P P    VYYFE+ +   G  G + IG +++   M R PGW+ +S GYHG
Sbjct:   59 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 138

HSP 2 Score: 44.669 bits (104), Expect = 1.293e-15
Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+
Sbjct:  150 GQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLY 195

[Close]

BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RANB9_XENLA (Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.310e-14
Identity = 25/80 (31.25%), Postives = 40/80 (50.00%), Query Frame = 2

Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHG
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHG 111

HSP 2 Score: 44.2838 bits (103), Expect = 2.310e-14
Identity = 18/46 (39.13%), Postives = 27/46 (58.70%), Query Frame = 1

Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N      F+TKNG  +G  + D+   L+
Sbjct:  123 GQPYGPTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLY 168

The following BLAST results are available for this feature:

BLAST of CF417742 vs. ExPASy Swiss-Prot

BLAST of CF417742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11


Match Name	E-value	Identity	Description
RBP9X_DROME	1.930e-17	37.66	Ran-binding proteins 9/10 homolog OS=Drosophila me...	[more]
YC5C_SCHPO	1.596e-16	43.48	Uncharacterized protein C1259.12c OS=Schizosacchar...	[more]
RBP10_DANRE	4.533e-16	33.75	Ran-binding protein 10 OS=Danio rerio GN=ranbp10 P...	[more]
RBP10_MOUSE	9.934e-16	33.75	Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 ...	[more]
RBP10_HUMAN	9.944e-16	33.75	Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ...	[more]
RBP10_BOVIN	9.944e-16	33.75	Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE...	[more]
RANB9_HUMAN	1.288e-15	33.75	Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE...	[more]
RANB9_MOUSE	1.291e-15	33.75	Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE...	[more]
RANB9_DANRE	1.293e-15	35.00	Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=...	[more]
RANB9_XENLA	2.310e-14	31.25	Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-672 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417742 ID=CF417742; Name=CF417742; organism=Citrus sinensis; type=EST; length=660bp
AAGTTACGAACTCCGAACTCTCCTGCTCATGTATGATTCTTTGAAACAAG
TGTAGGGTTTCACTTTATGCCAATTCCAAACAATGAGCACAAACAACACT
AACAACATTAAAAATGAAGATCTCGGCTTGCACTTCCTCGCGCTGGCCCG
GGCTTCTTCGAGCTCGATGGGCGGAAAGCGGGAGGAGGAGGATTTTGAGG
AAGAAGAGGTGCCGACGGAGCTGAACACGATCAACAGCTCTGGAGGGTTC
CTGGTGGTTTCGCCGGATAAGTTGTCGGTCAAGTACACTAGCGTCAATCT
GCACGGCCATGATGTCGGCGTCGTCCAAGCTAACAAGCCGGCTCCTGTTA
AGCGGCTTGTTTATTACTTTGAGATTTACGTGGAGGACGCTGGTGCCAAG
GGCCAGATTGCCATTGGATTTACCAGTGAGTCTTTCAAGATGCGGAGGCA
ACCAGGGTGGGAAGCGAACAGTTGTGGATACCATGGGGNATGATGGATTG
CTTTATCGTGGACAAGGAAAAGGGAGAGGCCTTTGGCCCTACGTTTACAA
CTAATGATACTGTTGGTGGTGGTATTAACTATGCTTCACAGGAATTTTTT
TTCACTAAAAATGGTTCATTAGTAGGAGCAGTGTACAAGGACATCAAGGG
TCCCTTGTTT