CF417747

Overview
NameCF417747
Unique NameCF417747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417747 vs. ExPASy Swiss-Prot
Match: FB121_ARATH (F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.538e-73
Identity = 138/222 (62.16%), Postives = 167/222 (75.23%), Query Frame = 2
Query:   38 EMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASGK---DSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFILSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPRERLXAAAVDTSPHDLHISDCLNDLHPGDHIEI 694
            +MSVLDLPEL L+CIL+ LPPSGLC+MA VCSSLR+RC+SDHLWEKH+K KWG+I+GPAA+REWQ +++S     DS H + G    + K+            +  D  ++   + LP+DS+  MS YL+LETGRFWFPAQVYNRENGHVGF+LSCYDAELSYD  TDTFQARYPPHGRR  AIE GV  +R+ AA +D SPH LH+SD L +L PGDHIEI
Sbjct:   59 QMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLG-FAKIISLIRSLSSVFRE--DKQRRGYASSLPLDSS--MSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEI 275          
BLAST of CF417747 vs. ExPASy Swiss-Prot
Match: FB118_ARATH (F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.328e-71
Identity = 132/221 (59.73%), Postives = 164/221 (74.21%), Query Frame = 2
Query:   38 EMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASGK--DSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFILSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPRERLXAAAVDTSPHDLHISDCLNDLHPGDHIEI 694
            +MS+LDLP+L L+CILE LPPS LC MA VCSSLR+RC+SDHLWEKH+K KWG+I+GP+A++EWQ +L+S    DS H K     L   +              H   ++   + +P+DS   M++YL+LETGRFWFPAQVYNRENGHVGF+LSCYDAELSYD  T+TFQARYPPHG+R IA+E  V  ER+ AA VD SPH+L++SD LN+L PGDHIEI
Sbjct:   59 KMSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSSPYHLDSPHHKTSHLGLAKIISLMRSLSSIFRDDDH---RRRYPSSIPLDST--MNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEKDVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEI 274          
BLAST of CF417747 vs. ExPASy Swiss-Prot
Match: FB132_ARATH (F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.408e-60
Identity = 117/225 (52.00%), Postives = 149/225 (66.22%), Query Frame = 2
Query:   38 EMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLAS-----GKDSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRL-PVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFILSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPRERLXAAAVDTSPHDLHISDCLNDLHPGDHIEI 694
            +MS+LDLP+L L+CILEKL PS LC M +VCS LRD+C+SDHLWEKHM+ KWGR++G AA +EW+ H+A+        S+  ++ K   W                 H    + +++ L P+D  S+M WY  LE G+FWFPAQVYNRENGHVGF++SCYDA++ YD  TDTFQARY  HGRR  A E  V  +RL  +  DT   DLH+SDCL+ L PGDH EI
Sbjct:   56 KMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQEWKSHVATIMRCLTSSSSSSRKSKPN-WSSRFVANLKPFAWLSSNHGCENRGSSSYLAPID--SVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQARYSAHGRR--AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEI 275          
The following BLAST results are available for this feature:
BLAST of CF417747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB121_ARATH1.538e-7362.16F-box protein At2g32560 OS=Arabidopsis thaliana GN... [more]
FB118_ARATH9.328e-7159.73F-box protein At2g26850 OS=Arabidopsis thaliana GN... [more]
FB132_ARATH7.408e-6052.00F-box protein At2g41170 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-677 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417747 ID=CF417747; Name=CF417747; organism=Citrus sinensis; type=EST; length=694bp
CTCTAATGATCGCGTTGAAGAAGTGAGTGGAGGAGCAGAGATGTCAGTTC
TAGACTTGCCTGAGTTGGTCTTAGAATGTATTCTTGAGAAATTACCACCT
TCGGGGCTTTGTAACATGGCTGCTGTTTGTAGTTCATTGAGAGATAGATG
TATGAGTGATCACCTTTGGGAGAAACATATGAAGCAAAAATGGGGTCGAA
TTGTTGGCCCTGCTGCTTATAGAGAGTGGCAATGGCATCTTGCTTCTGGA
AAAGATTCTACTCATCTTAAACAAGGAAAGCAAAGACTTTGGATGAAGCT
TTTCTCTTTTGTTAGATCGTTTTCTTGGGTCCGATCAAAGGTTCATGATA
CTAGCAAGCAGACAACAACAACTCGTTTGCCTGTTGATTCAAATTCAATC
ATGTCTTGGTATCTTGCTCTGGAGACTGGCCGCTTTTGGTTCCCTGCTCA
AGTCTATAATCGCGAGAATGGTCATGTTGGCTTTATTCTCTCGTGCTATG
ATGCAGAGCTTAGCTATGATCAGAGTACCGACACCTTCCAAGCCAGATAT
CCACCACATGGAAGGAGGCCAATTGCTATAGAGTGTGGGGTGCCACGGGA
AAGGCTTANAGCAGCAGCTGTTGATACTTCACCCCACGATCTTCACATTT
CAGATTGCTTGAATGATTTGCACCCAGGTGATCACATAGAGATT
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