CF417755

Overview
NameCF417755
Unique NameCF417755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_ARATH (Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.249e-96
Identity = 172/225 (76.44%), Postives = 197/225 (87.56%), Query Frame = 3
Query:    9 FKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKLNLFLK 683
            FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ SKRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K    E+DNLPSM+A++I++ N +++I TYFGG      DIPDM E++E D+++EN  DPATL STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+  L ++
Sbjct:   11 FKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDK--GKEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATLQSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVME 229          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_DICDI (Autophagy-related protein 3 OS=Dictyostelium discoideum GN=atg3 PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 7.190e-44
Identity = 109/244 (44.67%), Postives = 139/244 (56.97%), Query Frame = 3
Query:   18 TVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGA-GGEILVDNEDNDGWLATHGKPKAKCDEDE---------DDNLPSMEAVEISK---NNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATL-----PSTYLVAHE----------PDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLK 665
            TVEK+T   + S F E+GVL+  EFV AGD L  KC TW+WESG+PS+  SYLP +KQFL+TRNVPC  R  ++E E + +   EI ++++  D W+A          EDE         DD  P+      +K   NNN    +           DIPD+ ++ + D+IIE E DPA L      +T   A+            D+DNILRTRTYDISITYDKYYQTPRVWL GYDE+R  LK
Sbjct:   16 TVEKVTPTLSTSKFLEEGVLTPEEFVQAGDLLTDKCQTWTWESGDPSRNVSYLPKEKQFLLTRNVPCYNRVRTLENESKASKADEIQIEDDGEDSWVAPQPVGNQDDIEDEKVDISSLKIDDKKPNTTTTTTAKPTNNNN----NNNDDEDEDEDGDIPDLDDFQD-DNIIEEE-DPAVLSKNNKTTTTTTANNNNNNNSENKVEDNDNILRTRTYDISITYDKYYQTPRVWLFGYDENRKPLK 253          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_DANRE (Autophagy-related protein 3 OS=Danio rerio GN=atg3 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 92/230 (40.00%), Postives = 120/230 (52.17%), Query Frame = 3
Query:    3 GIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKLN 671
            G   G  E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE +K K YLP DKQFL+TRNVPC +R   +E   E    E +++ +D D GW+ T          +    +       ++ N    A             +  DM EY E   +   ETD ATL ++ +       A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L ++
Sbjct:   10 GTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEEAKVKPYLPNDKQFLLTRNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTFHNSGVTGVTEAVREISLDNKDNMNMNVKTGACGNSGDDDDDEEGEAADMEEYEESGLL---ETDDATLDTSKMADLSKTKAEAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEDRQPLTVD 233          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_MOUSE (Autophagy-related protein 3 OS=Mus musculus GN=Atg3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.041e-34
Identity = 90/220 (40.91%), Postives = 122/220 (55.45%), Query Frame = 3
Query:   24 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLL 662
            E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP DKQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T+         +    + ++E+ +  K  +  A+            +  DM EY E   +   ETD ATL +  +V      A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTDKQFLVTKNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITEAVKEI-TLESKDSIKLQDCSALCD--EEDEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKADAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPL 227          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_BOVIN (Autophagy-related protein 3 OS=Bos taurus GN=ATG3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 91/221 (41.18%), Postives = 122/221 (55.20%), Query Frame = 3
Query:   24 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLL 662
            E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP+ KQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T H    A   E   +   ++E+ +  K  +  A+            +  DM EY E   +   ETD ATL +  +V           +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPSGKQFLVTKNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGIAGITEAVKE--ITLESKDSIKLQDCSALCE--EEEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPL 227          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_RAT (Autophagy-related protein 3 OS=Rattus norvegicus GN=Atg3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 88/222 (39.64%), Postives = 122/222 (54.95%), Query Frame = 3
Query:   24 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLATHGKP--KAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLL 662
            E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T+         +  ++  L S +++++   + +               +  DM EY E   +   ETD ATL +  +V      A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLESKDSIKLQDCSVLCDEE-----EEEEEGEAADMEEYEESGLL---ETDEATLDTRRIVEACKAKADAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPL 227          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_HUMAN (Autophagy-related protein 3 OS=Homo sapiens GN=ATG3 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 89/224 (39.73%), Postives = 120/224 (53.57%), Query Frame = 3
Query:   24 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVR---AISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLL 662
            E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T H        E       +++ + +   +N+R     +           +  DM EY E   +   ETD ATL +  +V           +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITE-------AVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPL 227          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_XENTR (Autophagy-related protein 3 OS=Xenopus tropicalis GN=atg3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 86/218 (39.45%), Postives = 121/218 (55.50%), Query Frame = 3
Query:   24 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYL------VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESR 653
            E +T     S FKE GV++  EF+ AGD+LV  CPTW W +GE SK K YLP DKQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T H       +  ++  L + +  + + N  V               +  DM +Y E   +++N  D AT+ ++ +       A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEESKIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDE---QEAIIEEDDGDGGWVDTFHHSLTGVTEAVKEITLETQDCGKTTSNIAVD------DDDDDDEGEAADMEDYEE-SGLLDN--DDATVDTSKIKEACKPKADLGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQR 222          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_XENLA (Autophagy-related protein 3 OS=Xenopus laevis GN=atg3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 87/219 (39.73%), Postives = 121/219 (55.25%), Query Frame = 3
Query:   24 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT--HGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYL------VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESR 653
            E +T     S FKE GV++  EF+ AGD+LV  CPTW W +GE SK K YLP DKQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T  H       +  ++  L + +  + + N  V               +  DM +Y E   ++EN  D AT+ ++ +       A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEESKIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDE---QEAIIEEDDGDGGWVDTFHHTGLSGVTEAVKEITLETQDCGKTTDNIAV------CDDDDDDEGEAADMEDYEE-SGLLEN--DDATVDTSKIKEACKPKADLGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQR 223          
BLAST of CF417755 vs. ExPASy Swiss-Prot
Match: ATG3_CRYNE (Autophagy-related protein 3 OS=Cryptococcus neoformans GN=ATG3 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 81/217 (37.33%), Postives = 112/217 (51.61%), Query Frame = 3
Query:   51 SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNED--------NDGWLATH---GKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGG-----XXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESR 653
            S FKE G ++  EFV AGD L  K P W WE GE S+ + +LP DKQ+L+TRNVPCLRRA +V+        E L+   D        +D W+ATH     P    D DE  ++P  ++   +    +  ++   GG           DIPDM E    D  +E++     +  +    +     N+L+ RTYD  I+YDK+YQTPR WL GYDE +
Sbjct:   26 SKFKEHGRITPEEFVAAGDFLTFKFPVWQWEKGESSRARDFLPPDKQYLVTRNVPCLRRATAVDYTNADEDAEKLLSFLDDAEEAPGPDDDWVATHINRSPPHRPTDMDEIPDIP--DSPTTAPTREMAGLNVSSGGKLEEDEIPDIDDIPDMDEEGLED--LEDDAAVRIVHPSEAEVNSTAGKNLLQVRTYDCIISYDKHYQTPRFWLFGYDEHK 238          
The following BLAST results are available for this feature:
BLAST of CF417755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ATG3_ARATH1.249e-9676.44Autophagy-related protein 3 OS=Arabidopsis thalian... [more]
ATG3_DICDI7.190e-4444.67Autophagy-related protein 3 OS=Dictyostelium disco... [more]
ATG3_DANRE2.477e-3640.00Autophagy-related protein 3 OS=Danio rerio GN=atg3... [more]
ATG3_MOUSE1.041e-3440.91Autophagy-related protein 3 OS=Mus musculus GN=Atg... [more]
ATG3_BOVIN1.151e-3341.18Autophagy-related protein 3 OS=Bos taurus GN=ATG3 ... [more]
ATG3_RAT1.503e-3339.64Autophagy-related protein 3 OS=Rattus norvegicus G... [more]
ATG3_HUMAN1.503e-3339.73Autophagy-related protein 3 OS=Homo sapiens GN=ATG... [more]
ATG3_XENTR5.711e-3339.45Autophagy-related protein 3 OS=Xenopus tropicalis ... [more]
ATG3_XENLA5.711e-3339.73Autophagy-related protein 3 OS=Xenopus laevis GN=a... [more]
ATG3_CRYNE3.133e-3137.33Autophagy-related protein 3 OS=Cryptococcus neofor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-685 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417755 ID=CF417755; Name=CF417755; organism=Citrus sinensis; type=EST; length=685bp
ACGGCATATTTAAGGGAACTGTAGAGAAAATCACAAGTCACCGCACTGTC
TCTGCCTTTAAAGAAAAAGGCGTTCTCAGTGTCAGCGAATTCGTTCTCGC
CGGCGACAATCTCGTCTCCAAATGCCCCACCTGGTCATGGGAATCGGGCG
AGCCGAGCAAGAGGAAGTCTTATTTACCAGCGGATAAGCAGTTCTTAATT
ACTAGAAACGTTCCGTGTCTAAGAAGAGCTGCTTCGGTGGAGGAAGAGTA
TGAAGGTGCTGGAGGCGAAATTTTGGTTGATAATGAAGATAATGATGGTT
GGCTGGCGACTCATGGGAAACCAAAAGCTAAATGTGATGAGGATGAGGAT
GACAACTTGCCGTCCATGGAGGCCGTAGAAATAAGCAAGAACAATAATGT
TCGAGCAATTTCTACCTACTTTGGGGGGGAGGAGGAGGAGGAANAAGATA
TTCCTGATATGGCAGAGTACAATGAACCTGACAGCATAATTGAAAACGAA
ACAGATCCTGCAACTCTTCCATCTACATATCTTGTGGCACATGAACCTGA
TGATGATAACATTCTCCGAACTCGAACTTACGATATCAGCATCACGTATG
ATAAATATTATCAAACTCCCCGTGTCTGGCTCACTGGATACGATGAGTCA
CGGATGCTTCTGAAACTGAACTTATTCTTGAAGAT
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