CF417769

Overview
NameCF417769
Unique NameCF417769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.198e-47
Identity = 92/122 (75.41%), Postives = 97/122 (79.51%), Query Frame = 1
Query:  127 VAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            V +  S+S KDY DPPPEPLFDA EL KWSFYRALIAEFIA             GYKSQTDPA N D C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKV+LVRAVMY
Sbjct:    6 VGDKRSFSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMY 127          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.260e-45
Identity = 91/133 (68.42%), Postives = 99/133 (74.44%), Query Frame = 1
Query:  109 MAKD---TGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            MAKD      AE G Y AKDY+DPPP PL DA ELTKWS YRA+IAEF+A             GYK Q+DP  N     C+GVGILGIAWAFGGMIF+LVYCTAG+SGGHINPAVTFGLFLARKVSLVRAV+Y
Sbjct:    1 MAKDIEAAAAAEGGEYMAKDYSDPPPAPLIDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLY 133          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.151e-44
Identity = 90/132 (68.18%), Postives = 97/132 (73.48%), Query Frame = 1
Query:  109 MAKD--TGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            MAKD      E G +SAKDYTDPPP PL D  ELTKWS YRA+IAEFIA             GYK Q+D   N     C+GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSL+RAV+Y
Sbjct:    1 MAKDIEASAPEGGEFSAKDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLY 132          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.337e-43
Identity = 88/122 (72.13%), Postives = 94/122 (77.05%), Query Frame = 1
Query:  133 EHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            E G +SAKDYTDPPP PL DA ELTKWS YRA+IAEFIA             GYK QTD A +     C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y
Sbjct:   12 EAGEFSAKDYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLY 133          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.053e-43
Identity = 90/132 (68.18%), Postives = 99/132 (75.00%), Query Frame = 1
Query:  109 MAKDTGVA--EHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            MAKD   +  E G +SAKDYTDPPP PL DA ELT+WS YRA+IAEFIA             GYK QTD + +     C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y
Sbjct:    1 MAKDIEASGPEAGEFSAKDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLY 132          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.757e-42
Identity = 85/128 (66.41%), Postives = 91/128 (71.09%), Query Frame = 1
Query:  109 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            MAKD  V E G  +A+DY DPPP P FD  EL KW  YRA+IAEF+A             GYK+QTD       C GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARKVSLVR V+Y
Sbjct:    1 MAKDLDVNESGPPAARDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLY 128          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.820e-42
Identity = 90/132 (68.18%), Postives = 95/132 (71.97%), Query Frame = 1
Query:  109 MAKDTG-VAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDPAKNVDG---CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            MAKD   V E G YSAKDY DPPP PL D  ELTKWS YRA IAEFIA             GYK Q+D    + G   C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSLVRA++Y
Sbjct:    1 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDT--KIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLY 130          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.820e-42
Identity = 89/135 (65.93%), Postives = 97/135 (71.85%), Query Frame = 1
Query:  109 MAKDTGV---AEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDPAKNVDG----CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            M KD  V   A  G ++AKDYTDPPP PL DA EL  WS YRA+IAEFIA             GYK QTD + +  G    C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y
Sbjct:    1 MGKDDVVQSGAGGGEFAAKDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLY 135          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.283e-41
Identity = 84/120 (70.00%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  139 GSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDP-AKNVDG-CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            G ++AKDYTDPPP PL DA EL  WS YRA+IAEFIA             GYK QTD  A   D  C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y
Sbjct:   14 GEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILY 133          
BLAST of CF417769 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.283e-41
Identity = 89/133 (66.92%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  109 MAKDTGV---AEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXXGYKSQTDP-AKNVDG-CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMY 492
            M KD  +   A  G ++AKDYTDPPP PL DA EL  WS YRA+IAEFIA             GYK QTD  A   D  C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y
Sbjct:    1 MGKDDVIESGAGGGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLY 133          
The following BLAST results are available for this feature:
BLAST of CF417769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP25_ARATH1.198e-4775.41Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP23_ORYSJ4.260e-4568.42Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP22_ORYSJ6.151e-4468.18Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP23_MAIZE2.337e-4372.13Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP24_MAIZE3.053e-4368.18Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP24_ARATH5.757e-4266.41Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP27_MAIZE9.820e-4268.18Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP22_MAIZE9.820e-4265.93Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_ORYSJ1.283e-4170.00Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE1.283e-4166.92Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-699 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417769 ID=CF417769; Name=CF417769; organism=Citrus sinensis; type=EST; length=493bp
AGAAAAAGAAAAAGAAAAAGGAAAAGGCTTCTCTCTCNTTGTGCTTGTGG
CTTTGCAGTGCTCTCAGTTTTCTCTGTTTCTCTCCAAATCATTGTTACTG
GTTTTCCAATGGCGAAGGACACTGGGGTGGCAGAGCACGGCTCATATTCA
GCCAAGGACTACACGGACCCACCGCCGGAGCCGCTATTCGACGCCGTGGA
GCTGACCAAATGGTCATTCTACAGAGCCTTGATAGCTGAGTTCATAGCAA
CCCTGCTCTTTCTTTACGTCACTGTCTTGACTGTCANTGGCTACAAAAGC
CAGACCGATCCCGCCAAGAACGTCGACGGCTGTGCCGGCGTCGGCATCCT
CGGCATCGCCTGGGCCTTCGGTGGCATGATCTTTGTCCTCGTTTACTGCA
CCGCCGGTATCTCAGGTGGTCACATTAACCCGGCAGTGACGTTCGGACTA
TTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGTGATGTACA
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