CF417776

Overview
NameCF417776
Unique NameCF417776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: C3H48_ARATH (Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.553e-58
Identity = 103/136 (75.74%), Postives = 121/136 (88.97%), Query Frame = 2
Query:    2 NTDLSLSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 409
            N DLSL+GPVGQVY++  G DLLF GTQDG+IL W++N TT+CF+PAASL GH+LAVVSL VGAN+LYSG+MDNSI+VW+L+ LQC QTLTEHTSVVMSL+CWDQFLLSCSLD T+K+W AT+ GNLEVTYTH EE
Sbjct:  214 NADLSLNGPVGQVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHKEE 349          

HSP 2 Score: 98.9821 bits (245), Expect = 2.192e-20
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  357 GLLQIVETWK*LILTMKKHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIXAIQLGPGRSVFHW-------*WDWSSESVAMV 629
            G L++  T K      +++GVLALCG+ D+E KPVLLCSCNDNS+  YDLPSF ERGKI AKQEI +IQ+GPG   F          W WS+ES  ++
Sbjct:  338 GNLEVTYTHK------EEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPSFTERGKILAKQEIRSIQIGPGGIFFTGDGSGQVKVWKWSTESTPIL 429          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: C3H63_ARATH (Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.898e-56
Identity = 99/136 (72.79%), Postives = 118/136 (86.76%), Query Frame = 2
Query:    2 NTDLSLSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 409
            N D SLSGPVGQVY++  G DLLF GTQDG+ILAW++N  TNCFEP+ASL GH+LAVV+L VGAN+LYSGSMD +I+VW+L+ LQC QTLT+H+SVVMSL+CWDQFLLSCSLD T+K+W A + GNLEVTYTH EE
Sbjct:  221 NADQSLSGPVGQVYSLVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEE 356          

HSP 2 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  357 GLLQIVETWK*LILTMKKHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS------FAERGKIFAKQEIXAIQLGPGRSVFHW-------*WDWSSESVA 623
            G L++  T K      ++HGVLALCG+ D+E KPVLLC+CNDN++R YDLPS      F ERGKIFAKQEI AIQ+GPG   F          W W +E  A
Sbjct:  345 GNLEVTYTHK------EEHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSLGLFIRFTERGKIFAKQEIRAIQIGPGGIFFTGDGTGQVKVWKWCTEPTA 440          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: C3H17_ORYSJ (Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.566e-53
Identity = 98/134 (73.13%), Postives = 115/134 (85.82%), Query Frame = 2
Query:    8 DLSLSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 409
            +++L+GP GQVYA+  GN+LLF  TQDG ILAW+F+  TN FEPAASL GH LAVVSLVVGA +LYS SMD +IRVW+L TLQC QTL++HT VVMS+LCWDQFLLSCSLD+TIKVW AT+SG+LEVTYTH EE
Sbjct:  222 EMNLTGPTGQVYALAVGNELLFAATQDGRILAWRFSAATNGFEPAASLVGHQLAVVSLVVGAMRLYSASMDKTIRVWDLATLQCIQTLSDHTGVVMSVLCWDQFLLSCSLDQTIKVWAATESGSLEVTYTHKEE 355          

HSP 2 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  357 GLLQIVETWK*LILTMKKHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIXAIQLGPGRSVF 587
            G L++  T K      ++HG LAL GMPD++ KPVLLCS NDN+VR YDLPSF++RG+IF+KQEI AIQ+GP    F
Sbjct:  344 GSLEVTYTHK------EEHGALALSGMPDAQSKPVLLCSLNDNTVRLYDLPSFSDRGRIFSKQEIRAIQVGPSGLFF 414          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: C3H62_ARATH (Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.515e-29
Identity = 66/135 (48.89%), Postives = 85/135 (62.96%), Query Frame = 2
Query:   11 LSLSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 409
            L  +G VGQV AM   N +LF GT  G+IL WK    +    F+   SL+GHS  V    VG   LYSGS+D +I++W+L TLQC  TL +HT  V SLLCWD+ L+S SLD TIKVW  +++G L+V  T  +E
Sbjct:  206 LQAAGVVGQVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWDKCLISSSLDGTIKVWAYSENGILKVVQTRRQE 340          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: C3H59_ARATH (Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana GN=ZFWD3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.282e-28
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 2
Query:    8 DLSLSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVT-TNCFEPAASLKGH-SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 409
            D+ L G VGQV+AM   N +LF GT  G+IL WK   + ++ F+   SL+GH S  V   VVG   LYSGS+D +I+VW+L TLQC  TL +H   V SLLCWD+ L+S SLD TIK+W  +++ +L+V  T  +E
Sbjct:  259 DVHLEGVVGQVHAMTAANGMLFAGTSSGSILVWKATDSESDPFKYLTSLEGHHSGEVTCFVVGGEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQTRKQE 394          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: MHCKB_DICDI (Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 2
Query:   14 SLSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 358
            +L G  G V ++   +  LF G+ D +I  W        F    +L+GH   V ++++    L+SGS D +I+VW+L+TL+C  TL  H   V +L    Q+L S S DKTIKVW
Sbjct:  497 TLKGHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIF----TLEGHDKPVHTVLLNDKYLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISGQYLFSGSNDKTIKVW 607          

HSP 2 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 2
Query:   59 NDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 397
            ++LLF G  D +I  + +   +   E   +LKGH   V S+      L+SGS D+SI+VW+L+ L+C  TL  H   V ++L  D++L S S DKTIKVW   D   LE  YT
Sbjct:  470 DNLLFTGCSDNSIRVYDYK--SQNMECVQTLKGHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLNDKYLFSGSSDKTIKVW---DLKTLECKYT 577          

HSP 3 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 2
Query:   68 LFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 358
            LF G+ D  I  W        F    +LKGH+  V ++ +    LYSGS D +IRVWNL++L+C  TL  H   V  ++  D+ L + S D TIK+W
Sbjct:  595 LFSGSNDKTIKVWDLKT----FRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLRGHDRWVEHMVICDKLLFTASDDNTIKIW 687          

HSP 4 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 2
Query:   68 LFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVW 358
            L+ G+ D  I  W         E +A+L+GH   V  +V+    L++ S DN+I++W+LETL+C  TL  H + V  L  W+  + ++SCS D++I+VW
Sbjct:  635 LYSGSYDKTIRVWNLK----SLECSATLRGHDRWVEHMVICDKLLFTASDDNTIKIWDLETLRCNTTLEGHNATVQCLAVWEDKKCVISCSHDQSIRVW 729          

HSP 5 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 2
Query:   14 SLSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 358
            +L G    V+ +   +  LF G+ D  I  W         E   +L+ H+ AV +L +    L+SGS D +I+VW+L+T +C  TL  HT  V ++      L S S DKTI+VW
Sbjct:  537 TLEGHDKPVHTVLLNDKYLFSGSSDKTIKVWDLKT----LECKYTLESHARAVKTLCISGQYLFSGSNDKTIKVWDLKTFRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVW 647          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.393e-12
Identity = 44/114 (38.60%), Postives = 58/114 (50.88%), Query Frame = 2
Query:   17 LSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 358
            LSG    V  +    ++L  G+ D  I  W  N+ T  F+  A L+GHS  V  L     KL SGSMD +IR+WN  T +C   L  HT  V+ L      L+S S D T+K+W
Sbjct:  269 LSGHSDGVMCLQLVRNILASGSYDATIRLW--NLAT--FQQVALLEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTFDSTLLVSGSADCTVKLW 378          

HSP 2 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 43/135 (31.85%), Postives = 62/135 (45.93%), Query Frame = 2
Query:   17 LSGPVGQVYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEETW 415
            L G    V  +   + LL  G+ D  +  W F+          +L+GH+  V  V ++     + SGS D++I++W+LET  C  T + H   V SL   D  L SCSLD TIK W       +   + H E  W
Sbjct:  349 LHGHTDSVLCLTFDSTLLVSGSADCTVKLWHFSGGKRI-----TLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWDIEKKKCVHTLFGHIEGVW 478          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: TRAF7_MOUSE (E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus GN=Traf7 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 2
Query:   38 VYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 358
            VY+MG   DLLF G+ D  I  W    T  C +   +L+GH   V++L +   KLYSGS D +I VW+++ LQ   T+  H + V +L+     L S SL K IKVW
Sbjct:  328 VYSMG---DLLFSGSSDKTIKVWDTCTTYKCQK---TLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSL-KAIKVW 427          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: TRAF7_HUMAN (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 2
Query:   38 VYAMGXGNDLLFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 358
            VY+MG   DLLF G+ D  I  W    T  C +   +L+GH   V++L +   KLYSGS D +I VW+++ LQ   T+  H + V +L+     L S SL K IKVW
Sbjct:  404 VYSMG---DLLFSGSSDKTIKVWDTCTTYKCQK---TLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNVLFSGSL-KAIKVW 503          
BLAST of CF417776 vs. ExPASy Swiss-Prot
Match: MHCKA_DICDI (Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   68 LFPGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCXQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVW 358
            LF  ++D  I  W  +   +C +   +LKGH  +V S VV    LYSGS DNSI+VW+L+TL+C  T+ + H+  V  L+ ++  ++S + D +IKVW
Sbjct: 1048 LFSTSKDNVIKIWDLS-NFSCID---TLKGHWNSVSSCVVKDRYLYSGSEDNSIKVWDLDTLECVYTIPKSHSLGVKCLMVFNNQIISAAFDGSIKVW 1141          
The following BLAST results are available for this feature:
BLAST of CF417776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
C3H48_ARATH1.553e-5875.74Zinc finger CCCH domain-containing protein 48 OS=A... [more]
C3H63_ARATH1.898e-5672.79Zinc finger CCCH domain-containing protein 63 OS=A... [more]
C3H17_ORYSJ2.566e-5373.13Zinc finger CCCH domain-containing protein 17 OS=O... [more]
C3H62_ARATH1.515e-2948.89Zinc finger CCCH domain-containing protein 62 OS=A... [more]
C3H59_ARATH1.282e-2848.53Zinc finger CCCH domain-containing protein 59 OS=A... [more]
MHCKB_DICDI6.830e-1437.39Myosin heavy chain kinase B OS=Dictyostelium disco... [more]
POF1_SCHPO6.393e-1238.60F-box/WD repeat-containing protein pof1 OS=Schizos... [more]
TRAF7_MOUSE1.860e-1141.12E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus ... [more]
TRAF7_HUMAN2.429e-1141.12E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens ... [more]
MHCKA_DICDI4.144e-1139.80Myosin heavy chain kinase A OS=Dictyostelium disco... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-706 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417776 ID=CF417776; Name=CF417776; organism=Citrus sinensis; type=EST; length=638bp
TAATACTGACCTGAGTCTTAGTGGACCTGTGGGACAAGTTTACGCAATGG
GTGNCGGNAATGATTTACTCTTCCCTGGTACGCAGGATGGGGCTATATTG
GCATGGAAGTTTAATGTTACCACCAACTGCTTTGAACCAGCTGCGTCGCT
CAAAGGTCACTCTCTTGCAGTGGTATCTTTAGTTGTCGGAGCTAATAAGC
TTTACTCTGGTTCCATGGACAATTCAATAAGAGTGTGGAACCTTGAAACT
CTGCAGTGCNTACAGACTCTAACAGAGCACACTTCAGTCGTGATGTCACT
TCTTTGCTGGGATCAGTTTCTTTTATCATGTTCATTGGACAAAACAATAA
AGGTGTGGTTTGCTACAGATAGTGGAAACCTGGAAGTGACTTATACTCAC
AATGAAGAAACATGGAGTGCTTGCCCTGTGTGGAATGCCTGATTCAGAAG
GCAAGCCAGTCTTGCTGTGCTCTTGCAATGACAACTCTGTCCGCTTCTAT
GATTTGCCATCGTTTGCTGAGAGGGGTAAAATTTTTGCCAAACAAGAGAT
TCNAGCCATTCAGCTGGGCCCTGGGCGGTCTGTTTTTCACTGGTGATGGG
ACTGGTCAAGTGAGAGTGTGGCAATGGTGTAAACGGGC
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