CF417792

Overview
NameCF417792
Unique NameCF417792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:152..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 4.084e-90
Identity = 153/174 (87.93%), Postives = 162/174 (93.10%), Query Frame = 2
Query:   14 AMSLSXGGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            A  ++  GR+SMRKT +K V+S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG PSL+HAQ ILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPL
Sbjct:   24 APEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPL 197          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 6.967e-90
Identity = 155/174 (89.08%), Postives = 160/174 (91.95%), Query Frame = 2
Query:   14 AMSLSXGGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            A  +S  GRI+MRK  +KS  S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG PSL+HAQ ILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPL
Sbjct:   24 ASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 197          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 6.967e-90
Identity = 154/174 (88.51%), Postives = 161/174 (92.53%), Query Frame = 2
Query:   14 AMSLSXGGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            A  +    + +MRKT SKSVSS SPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG PSL+HAQ ILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL
Sbjct:   14 APEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPL 187          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 4.516e-89
Identity = 153/173 (88.44%), Postives = 162/173 (93.64%), Query Frame = 2
Query:   23 LSXGGRISMRKTGSKS--VSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            ++  G+++MRKT SK+  VSS SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG PSL+HAQ ILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPL
Sbjct:   27 ITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPL 199          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 5.898e-89
Identity = 153/167 (91.62%), Postives = 159/167 (95.21%), Query Frame = 2
Query:   35 GRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GR+SMRKT +K VSS SPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG PSLIHAQ ILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL
Sbjct:   29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPL 195          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 5.898e-89
Identity = 153/173 (88.44%), Postives = 162/173 (93.64%), Query Frame = 2
Query:   23 LSXGGRISMRKTGSKS--VSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            ++  G+++MRKT SK+  VSS SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG PSL+HAQ ILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPL
Sbjct:   26 VTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPL 198          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.006e-88
Identity = 153/173 (88.44%), Postives = 161/173 (93.06%), Query Frame = 2
Query:   23 LSXGGRISMRKTGSKS--VSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            ++  GR++MRKT +K+   SS SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG PSL+HAQ ILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPL
Sbjct:   27 ITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 199          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 1.716e-88
Identity = 153/167 (91.62%), Postives = 158/167 (94.61%), Query Frame = 2
Query:   35 GRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GR+SMRKT SK+VSS SPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLG  SLIHAQ ILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPL 177          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.241e-88
Identity = 153/169 (90.53%), Postives = 158/169 (93.49%), Query Frame = 2
Query:   35 GRISMRKTGSK--SVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GRI+MRKT  K  +V S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG PSL+HAQ ILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPL
Sbjct:   31 GRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 199          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 4.993e-88
Identity = 152/173 (87.86%), Postives = 161/173 (93.06%), Query Frame = 2
Query:   23 LSXGGRISMRKTGSKS--VSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            ++  G+  MRKT +K+  VSS SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG PSL+HAQ ILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPL
Sbjct:   27 ITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPL 199          
The following BLAST results are available for this feature:
BLAST of CF417792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_TOBAC4.084e-9087.93Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC6.967e-9089.08Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_CUCSA6.967e-9088.51Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_TOBAC4.516e-8988.44Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_SOYBN5.898e-8991.62Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_TOBAC5.898e-8988.44Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC1.006e-8888.44Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB21_SOYBN1.716e-8891.62Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2A_SPIOL2.241e-8890.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC4.993e-8887.86Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-722 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417792 ID=CF417792; Name=CF417792; organism=Citrus sinensis; type=EST; length=536bp
CTCGCCCCTTCAGGCAATGAGTCTGAGCANTGGTGGCCGCATCTCCATGC
GTAAAACCGGGAGCAAGTCTGTTTCTTCANGTAGCCCGTGGTACGGCCCG
GACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACTT
GACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTTTCAG
CTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGC
AGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGC
CCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTC
AGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAANCCAAGCTTGATC
CACGCCCAGANCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGG
AGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTG
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGG
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