CF417802
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 1.341e-46 Identity = 87/110 (79.09%), Postives = 94/110 (85.45%), Query Frame = 1 Query: 88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +TAL+QSNE V K+G GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGW TAGLSADPETFAKNRELEVIH + L L CVFPEILSKNG Sbjct: 14 QTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM-LGALGCVFPEILSKNG 122 HSP 2 Score: 26.1794 bits (56), Expect = 1.341e-46 Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 3 Query: 48 MATSAIQQSXXAGQDRLE 101 MATSAIQQS AGQ L+ Sbjct: 1 MATSAIQQSAFAGQTALK 18
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 1.341e-46 Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 1 Query: 88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +TAL+ NE VRK+G GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH + L L CVFPEILSKNG Sbjct: 14 QTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM-LGALGCVFPEILSKNG 122 HSP 2 Score: 26.5646 bits (57), Expect = 1.341e-46 Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3 Query: 48 MATSAIQQSXXAGQDRLEA 104 MATSAIQQS AGQ L++ Sbjct: 1 MATSAIQQSAFAGQTALKS 19
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.748e-46 Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 1 Query: 88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +TAL+ NE VRK+G +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH + L L CVFPEILSKNG Sbjct: 14 QTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM-LGALGCVFPEILSKNG 122 HSP 2 Score: 25.409 bits (54), Expect = 1.748e-46 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3 Query: 48 MATSAIQQSXXAGQDRLEA 104 MATSAI+QS AGQ L++ Sbjct: 1 MATSAIEQSAFAGQTALKS 19
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 177.948 bits (450), Expect = 7.157e-45 Identity = 85/110 (77.27%), Postives = 95/110 (86.36%), Query Frame = 1 Query: 88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +T L+ NE VRKVG +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFAKNRELEVIH + L L CVFPE+L+KNG Sbjct: 14 QTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM-LGALGCVFPELLAKNG 121 HSP 2 Score: 24.2534 bits (51), Expect = 7.157e-45 Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3 Query: 48 MATSAIQQSXXAGQDRLE 101 MATS IQQS AGQ L+ Sbjct: 1 MATSTIQQSAFAGQTLLK 18
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 4.710e-44 Identity = 86/106 (81.13%), Postives = 90/106 (84.91%), Query Frame = 1 Query: 100 RQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 + NEF+RKVG GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH + L L CVFPEILSKNG Sbjct: 18 KSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM-LGALGCVFPEILSKNG 122
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.370e-43 Identity = 85/110 (77.27%), Postives = 95/110 (86.36%), Query Frame = 1 Query: 88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +TAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFAKNRELEVIH + L L C+FPE+LSKNG Sbjct: 14 QTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM-LGALGCIFPELLSKNG 121
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.053e-43 Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 1 Query: 109 NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH + L L CVFPEILSKNG Sbjct: 20 DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM-LGALGCVFPEILSKNG 120
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.053e-43 Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 1 Query: 109 NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH + L L CVFPEILSKNG Sbjct: 20 DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM-LGALGCVFPEILSKNG 120
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 5.207e-43 Identity = 83/110 (75.45%), Postives = 89/110 (80.91%), Query Frame = 1 Query: 88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +T LRQ NEF+RK G R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH + L L C FPE+L KNG Sbjct: 14 KTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM-LGALGCTFPELLEKNG 122
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 3.732e-41 Identity = 84/111 (75.68%), Postives = 92/111 (82.88%), Query Frame = 1 Query: 88 RTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417 +T LR Q NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGW TA +SADPETFAKNRELEVIH + L L CVFPE+L+KNG Sbjct: 15 QTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAM-LGALGCVFPELLAKNG 123 The following BLAST results are available for this feature:
BLAST of CF417802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417802 ID=CF417802; Name=CF417802; organism=Citrus sinensis; type=EST; length=493bpback to top |