CF417802

Overview
NameCF417802
Unique NameCF417802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:426..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.341e-46
Identity = 87/110 (79.09%), Postives = 94/110 (85.45%), Query Frame = 1
Query:   88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +TAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGW TAGLSADPETFAKNRELEVIH +    L  L CVFPEILSKNG
Sbjct:   14 QTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM-LGALGCVFPEILSKNG 122          

HSP 2 Score: 26.1794 bits (56), Expect = 1.341e-46
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   48 MATSAIQQSXXAGQDRLE 101
            MATSAIQQS  AGQ  L+
Sbjct:    1 MATSAIQQSAFAGQTALK 18          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.341e-46
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 1
Query:   88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +TAL+  NE VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH +    L  L CVFPEILSKNG
Sbjct:   14 QTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM-LGALGCVFPEILSKNG 122          

HSP 2 Score: 26.5646 bits (57), Expect = 1.341e-46
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3
Query:   48 MATSAIQQSXXAGQDRLEA 104
            MATSAIQQS  AGQ  L++
Sbjct:    1 MATSAIQQSAFAGQTALKS 19          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.748e-46
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 1
Query:   88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +TAL+  NE VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH +    L  L CVFPEILSKNG
Sbjct:   14 QTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM-LGALGCVFPEILSKNG 122          

HSP 2 Score: 25.409 bits (54), Expect = 1.748e-46
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3
Query:   48 MATSAIQQSXXAGQDRLEA 104
            MATSAI+QS  AGQ  L++
Sbjct:    1 MATSAIEQSAFAGQTALKS 19          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 7.157e-45
Identity = 85/110 (77.27%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +T L+  NE VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFAKNRELEVIH +    L  L CVFPE+L+KNG
Sbjct:   14 QTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM-LGALGCVFPELLAKNG 121          

HSP 2 Score: 24.2534 bits (51), Expect = 7.157e-45
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   48 MATSAIQQSXXAGQDRLE 101
            MATS IQQS  AGQ  L+
Sbjct:    1 MATSTIQQSAFAGQTLLK 18          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.710e-44
Identity = 86/106 (81.13%), Postives = 90/106 (84.91%), Query Frame = 1
Query:  100 RQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +  NEF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH +    L  L CVFPEILSKNG
Sbjct:   18 KSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM-LGALGCVFPEILSKNG 122          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.370e-43
Identity = 85/110 (77.27%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +TAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFAKNRELEVIH +    L  L C+FPE+LSKNG
Sbjct:   14 QTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM-LGALGCIFPELLSKNG 121          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.053e-43
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 1
Query:  109 NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH +    L  L CVFPEILSKNG
Sbjct:   20 DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM-LGALGCVFPEILSKNG 120          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.053e-43
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 1
Query:  109 NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH +    L  L CVFPEILSKNG
Sbjct:   20 DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM-LGALGCVFPEILSKNG 120          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.207e-43
Identity = 83/110 (75.45%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   88 RTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +T LRQ NEF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGW TAGLSADPETFA+NRELEVIH +    L  L C FPE+L KNG
Sbjct:   14 KTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM-LGALGCTFPELLEKNG 122          
BLAST of CF417802 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.732e-41
Identity = 84/111 (75.68%), Postives = 92/111 (82.88%), Query Frame = 1
Query:   88 RTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWXTAGLSADPETFAKNRELEVIHXQMGQCLELLACVFPEILSKNG 417
            +T LR Q NE V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGW TA +SADPETFAKNRELEVIH +    L  L CVFPE+L+KNG
Sbjct:   15 QTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAM-LGALGCVFPELLAKNG 123          
The following BLAST results are available for this feature:
BLAST of CF417802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB21_GOSHI1.341e-4679.09Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP1.341e-4680.00Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC1.748e-4680.00Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_SILPR7.157e-4577.27Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB24_SOLLC4.710e-4481.13Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_LEMGI1.370e-4377.27Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_ORYSJ3.053e-4383.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.053e-4383.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA5.207e-4375.45Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_PINTH3.732e-4175.68Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-732 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417802 ID=CF417802; Name=CF417802; organism=Citrus sinensis; type=EST; length=493bp
GAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATG
GCAACCTCTGCTATCCAACAATCAGNANNNGCTGGCCAGGACCGCCTTGA
GGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGT
ATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGG
CCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCAT
ACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGNTACCGCTGGTTTA
TCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCA
CAGNCAGATGGGGCAATGCTTGGAGCTCTTGGCCTGCGTCTTCCCTGAAA
TCCTCTCCAAGAATGGGAGTGAAGTTCGGCGAAGCAGTTTGGGTTCAAGG
CTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTATCTTGG
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