CF417804

Overview
NameCF417804
Unique NameCF417804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:217..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF417804 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   61 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVGXALKRQGRTLY 291
            LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV  ALKRQGRTLY
Sbjct:   23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CF417804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA1.013e-3497.40Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA1.013e-3497.40Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE1.013e-3497.40Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE1.013e-3497.40Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR1.013e-3497.40Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL1.013e-3497.40Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ1.013e-3497.40Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH1.013e-3497.40Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT1.013e-3497.40Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT1.013e-3497.40Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-734 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417804 ID=CF417804; Name=CF417804; organism=Citrus sinensis; type=EST; length=520bp
GGGCGCGGTAAGGGAGGCAAGGGATTGGGAAAAGGAGGCTCCAAGCGTCN
NCGTANGGNGCTTCGCGATAACATTCAGGGTATCACAAAGCCAGCAATCC
GGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGCTTGATCTAC
GAGGAGACACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCCGTGA
CGCCGTGACCTACACTGAGCACGCCAGGAGAAAGACCGTGACCGCGATGG
ACGTCGGNNNCGCTCTCAAGAGGCAGGGCAGGACTCTTTATGGATTTGGG
GGTTAATTGTCTTAGGGTTCTGGAATTGAATGTTAATAGATCTTGACTCT
AGATCTTGATCTGGTAGATGGGGCTCTTAGTAGTTTGTTATTAGGTTGCT
GCTTTGTAATTCTATCAAGTTAAATCTTATCTTTATATTTGAGGCAATAT
AGAACTGTTTTCTTTGAAGGATTGTTCCGTGGTTCTGGATTTTATTTATT
AAACTATTTGATGTGCTGTT
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