CF417805

Overview
NameCF417805
Unique NameCF417805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417805 vs. ExPASy Swiss-Prot
Match: MPU1_ARATH (Mannose-P-dolichol utilization defect 1 protein homolog OS=Arabidopsis thaliana GN=At5g59470 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.809e-42
Identity = 79/123 (64.23%), Postives = 100/123 (81.30%), Query Frame = 2 
Query:    2 LILVAITYYYSQXXGTATWIXALLYCAIAPTILAGQINPVLFETIYAFQHITFLSARIPQIWKNFKNKSTGQLSFLTCLMSXGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILYR 370
            LILVA  YY+SQ     TW+ A+LY AIAPT+ AG+I+P LFE +YA +H+ FLSARIPQIWKNF+NKSTGQLSFLTCLM+ GGA+ RVFTSIQEKAP ++++G  +    NGI++SQ++LYR
Sbjct:  102 LILVACIYYFSQPLSVTTWVKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFLSARIPQIWKNFRNKSTGQLSFLTCLMNFGGALARVFTSIQEKAPLSMLLGIVLSIFTNGIIMSQILLYR 224
The following BLAST results are available for this feature:
BLAST of CF417805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MPU1_ARATH2.809e-4264.23Mannose-P-dolichol utilization defect 1 protein ho... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-735 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417805 ID=CF417805; Name=CF417805; organism=Citrus sinensis; type=EST; length=660bp
ATTAATTTTAGTTGCTATAACTTACTACTATTCACAAGNTGNTGGTACCG
CAACGTGGATCANGGCACTGCTATATTGTGCTATAGCACCAACCATTTTA
GCTGGTCAAATTAATCCCGTTCTTTTTGAAACTATATATGCATTCCAGCA
TATCACATTTTTATCTGCCAGGATCCCTCAAATATGGAAGAACTTTAAAA
ACAAAAGTACTGGACAGCTCAGCTTCTTGACATGTCTCATGAGTNNTGGT
GGTGCCATGGTGAGAGTTTTTACAAGCATCCAAGAAAAAGCTCCAACAAA
TGTTGTTATGGGCTCTACAATGGGTGCCTTGATGAATGGGATCGTCCTGA
GTCAGATGATTTTATACCGAAAACCTGAAGATAAGAAAGAGAAGAAAGAT
GAGTAAAAGGAGAACAGGCTATAGGTAGGTTCGCTCTGCTGACACCATGA
GGTTCGACAGGTTTGGCAAGTGAGCCGTCATTACCGGGCCAAGGTGTTAT
CATTCTGCCATTATGTAATGGTTTAAACTTAATTTAAGTTGTGTTTGGGT
GTGGGTGCAACTTGTTTTAATCTTAAATATATAATAAAGAGAAGGTGATA
CAGATATTTGATGGTTTGCATTGCTAAGTAGTCTTAAAAATTCTTCATAT
TTTGTGAAGA
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