CF417808
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 2.022e-46 Identity = 102/191 (53.40%), Postives = 125/191 (65.45%), Query Frame = 2 Query: 158 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SSRTXGNFSVDLKLGQVNSSAED---------SLNKCKEPGASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTFLS 682 MDWN K + + F+QE P++ +D S SS++ +FS DLKLG+ ++ SL+K K+ +K E S S S KR R G+ Q CLVDGCDSD SNCR+YH+RHKVC++HSKTP V I G KQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRR KPQP+ + R F + Sbjct: 1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPANFFT 188
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.958e-41 Identity = 97/202 (48.02%), Postives = 119/202 (58.91%), Query Frame = 2 Query: 158 MDWNLKP--AWDFTEFEQEAIPNVDAVDESSSRTXG------------NFSVDLKLGQVNS-SAEDSLNK----CKEP------GASKMESPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTFLS 682 MDW+LK +WD E E A+PN+ A ++ SVDLKLG + A D+L + K P AS + P + + KR R G Q SC VDGC +DLS RDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L EFDE KRSCRKRLDGHNRRR KPQ D +S +G+F++ Sbjct: 1 MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQADSMS-SGSFMT 201
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL16_ORYSJ (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.126e-39 Identity = 94/198 (47.47%), Postives = 111/198 (56.06%), Query Frame = 2 Query: 158 MDWNLK----PAWDFT-EFEQEAIPNVDAVDESSSRTXGN-----------FSVDLKLG------------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRAR--AANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLS 661 M+W+LK +W+ E E V A SSS G SVDLKLG +V + E + K A+ + + S KR R AA Q SC VDGC DLS CRDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L+EFDE KRSCRKRLDGHNRRR KPQPD ++ Sbjct: 1 MEWDLKMPPAASWELADELENSGGGGVPAAVSSSSAAVGGGVNAGGGGRQECSVDLKLGGLGEFGGGGAQPRVAVAGEPAKGKGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQPDPMN 198
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL2_ORYSJ (Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36 Identity = 92/188 (48.94%), Postives = 108/188 (57.45%), Query Frame = 2 Query: 158 MDWNLK-PAWDFTEFEQEAIPNVDAVDESSSRTXGNFSVDLKLG-----------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTA--SCLVDGCDSDLSNC-RDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTF 676 MDW+ K P+WD V G ++DLKLG S+A ++ P AS S + +G KRARA G Q A +C V+GC +DLS C RDYHRRHKVCE HSKT V + GQ+QRFCQQCSRFH L EFDE KRSCRKRLDGHN+RR KPQPD L+ F Sbjct: 1 MDWDAKMPSWDLGTV-------VGPSGGGGGGGGGGGALDLKLGAPTSWKTTTTVSAASAAPAAVAPPPPPPASSSSSAAAAG--KRARAGQ-GQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPDPLNPGNLF 178
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34 Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 2 Query: 377 KRARAANNGSQ-----TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLS 661 +RAR + G +C VDGC SDLS CRDYHRRHKVCE H+KTP V++ GQ+QRFCQQCSRFH L EFD+GK+SCRKRLDGHNRRR KPQ D L+ Sbjct: 74 RRARGGSGGGGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQHDALN 173
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL14_ARATH (Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3) HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31 Identity = 77/173 (44.51%), Postives = 102/173 (58.96%), Query Frame = 2 Query: 161 DWNLKPAWDFTEFEQEAIPNVDAVDESSSRTXGNFS-----VDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXK-PQPDQLS 661 +WN K WD+ EA P VD + T N S +DL LG ++ E++ + ++ P+ K+ R+ + G C VD C DLS+ +DYHRRHKVCE+HSK + L+ Q QRFCQQCSRFH L EFDEGKRSCR+RL GHNRRR K QP++++ Sbjct: 42 EWNSK-MWDWDSRRFEAKP-VDVEVQEFDLTLRNRSGEERGLDLNLGSGLTAVEET--------TTTTQNVRPN---KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVA 201
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSJ (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30 Identity = 67/141 (47.52%), Postives = 92/141 (65.25%), Query Frame = 2 Query: 269 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTFLS 682 + LKLG+ + ED N P + +PSP G K+ + A +Q C V+GC+ DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ KRSCR+RL HN RR KPQP+ +S + + LS Sbjct: 131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLS 269
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSI (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30 Identity = 67/141 (47.52%), Postives = 92/141 (65.25%), Query Frame = 2 Query: 269 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTFLS 682 + LKLG+ + ED N P + +PSP G K+ + A +Q C V+GC+ DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ KRSCR+RL HN RR KPQP+ +S + + LS Sbjct: 131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLS 269
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL16_ARATH (Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30 Identity = 74/168 (44.05%), Postives = 89/168 (52.98%), Query Frame = 2 Query: 161 DWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTXGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLS 661 DW + WD FE + S + +DL L + E + P + K+ S SP G C VD C DLS +DYHRRHKVCE+HSK + L+ Q QRFCQQCSRFH L EFDEGKRSCR+RLDGHNRRR K QPD ++ Sbjct: 8 DWQMNRWKWDGQRFEAIELQG------ESLQLSNKKGLDLNLPCGFNDVEGTPVDLTRP-SKKVRSGSPGSG------GGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPDAIT 162
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL2_ARATH (Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29 Identity = 72/163 (44.17%), Postives = 97/163 (59.51%), Query Frame = 2 Query: 185 DFTEFEQEAIPNVDA--VDESSSRTXGNFSVD----LKLGQVNSSAED--SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQP 649 +FT E++P A +D S S S D LKLG+ + ED + K G + S K++++ QT C V+GC+ DLS+ +DYHR+H++CE HSK P+V++ G ++RFCQQCSRFHCL EFDE KRSCR+RL HN RR KP P Sbjct: 84 NFTSETGESLPGEFAKGIDTSPSLELSFGSGDPVLGLKLGK-RTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNP 245 The following BLAST results are available for this feature:
BLAST of CF417808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417808 ID=CF417808; Name=CF417808; organism=Citrus sinensis; type=EST; length=683bpback to top |