CF417808

Overview
NameCF417808
Unique NameCF417808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1035 contig Csv1_Contig1035:192..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.022e-46
Identity = 102/191 (53.40%), Postives = 125/191 (65.45%), Query Frame = 2
Query:  158 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SSRTXGNFSVDLKLGQVNSSAED---------SLNKCKEPGASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTFLS 682
            MDWN K +  +   F+QE  P++  +D S     SS++  +FS DLKLG+   ++           SL+K K+   +K E  S S S KR R    G+ Q   CLVDGCDSD SNCR+YH+RHKVC++HSKTP V I G KQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRR KPQP+ + R   F +
Sbjct:    1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPANFFT 188          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.958e-41
Identity = 97/202 (48.02%), Postives = 119/202 (58.91%), Query Frame = 2
Query:  158 MDWNLKP--AWDFTEFEQEAIPNVDAVDESSSRTXG------------NFSVDLKLGQVNS-SAEDSLNK----CKEP------GASKMESPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTFLS 682
            MDW+LK   +WD  E E  A+PN+ A   ++                   SVDLKLG +    A D+L +     K P       AS  + P  + + KR R    G   Q  SC VDGC +DLS  RDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L EFDE KRSCRKRLDGHNRRR KPQ D +S +G+F++
Sbjct:    1 MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQADSMS-SGSFMT 201          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL16_ORYSJ (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.126e-39
Identity = 94/198 (47.47%), Postives = 111/198 (56.06%), Query Frame = 2
Query:  158 MDWNLK----PAWDFT-EFEQEAIPNVDAVDESSSRTXGN-----------FSVDLKLG------------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRAR--AANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLS 661
            M+W+LK     +W+   E E      V A   SSS   G             SVDLKLG            +V  + E +  K     A+   + + S   KR R  AA    Q  SC VDGC  DLS CRDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L+EFDE KRSCRKRLDGHNRRR KPQPD ++
Sbjct:    1 MEWDLKMPPAASWELADELENSGGGGVPAAVSSSSAAVGGGVNAGGGGRQECSVDLKLGGLGEFGGGGAQPRVAVAGEPAKGKGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQPDPMN 198          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL2_ORYSJ (Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36
Identity = 92/188 (48.94%), Postives = 108/188 (57.45%), Query Frame = 2
Query:  158 MDWNLK-PAWDFTEFEQEAIPNVDAVDESSSRTXGNFSVDLKLG-----------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTA--SCLVDGCDSDLSNC-RDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTF 676
            MDW+ K P+WD           V           G  ++DLKLG              S+A  ++     P AS   S + +G  KRARA   G Q A  +C V+GC +DLS C RDYHRRHKVCE HSKT  V + GQ+QRFCQQCSRFH L EFDE KRSCRKRLDGHN+RR KPQPD L+    F
Sbjct:    1 MDWDAKMPSWDLGTV-------VGPSGGGGGGGGGGGALDLKLGAPTSWKTTTTVSAASAAPAAVAPPPPPPASSSSSAAAAG--KRARAGQ-GQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPDPLNPGNLF 178          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 2
Query:  377 KRARAANNGSQ-----TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLS 661
            +RAR  + G         +C VDGC SDLS CRDYHRRHKVCE H+KTP V++ GQ+QRFCQQCSRFH L EFD+GK+SCRKRLDGHNRRR KPQ D L+
Sbjct:   74 RRARGGSGGGGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQHDALN 173          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL14_ARATH (Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 77/173 (44.51%), Postives = 102/173 (58.96%), Query Frame = 2
Query:  161 DWNLKPAWDFTEFEQEAIPNVDAVDESSSRTXGNFS-----VDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXK-PQPDQLS 661
            +WN K  WD+     EA P VD   +    T  N S     +DL LG   ++ E++         +  ++  P+   K+ R+ + G     C VD C  DLS+ +DYHRRHKVCE+HSK  + L+  Q QRFCQQCSRFH L EFDEGKRSCR+RL GHNRRR K  QP++++
Sbjct:   42 EWNSK-MWDWDSRRFEAKP-VDVEVQEFDLTLRNRSGEERGLDLNLGSGLTAVEET--------TTTTQNVRPN---KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVA 201          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSJ (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 67/141 (47.52%), Postives = 92/141 (65.25%), Query Frame = 2
Query:  269 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTFLS 682
            + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+ DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ KRSCR+RL  HN RR KPQP+ +S + + LS
Sbjct:  131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLS 269          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSI (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 67/141 (47.52%), Postives = 92/141 (65.25%), Query Frame = 2
Query:  269 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLSRTGTFLS 682
            + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+ DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ KRSCR+RL  HN RR KPQP+ +S + + LS
Sbjct:  131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLS 269          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL16_ARATH (Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 74/168 (44.05%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  161 DWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTXGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQPDQLS 661
            DW +    WD   FE   +         S +      +DL L    +  E +      P + K+ S SP            G     C VD C  DLS  +DYHRRHKVCE+HSK  + L+  Q QRFCQQCSRFH L EFDEGKRSCR+RLDGHNRRR K QPD ++
Sbjct:    8 DWQMNRWKWDGQRFEAIELQG------ESLQLSNKKGLDLNLPCGFNDVEGTPVDLTRP-SKKVRSGSPGSG------GGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPDAIT 162          
BLAST of CF417808 vs. ExPASy Swiss-Prot
Match: SPL2_ARATH (Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 72/163 (44.17%), Postives = 97/163 (59.51%), Query Frame = 2
Query:  185 DFTEFEQEAIPNVDA--VDESSSRTXGNFSVD----LKLGQVNSSAED--SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRXKPQP 649
            +FT    E++P   A  +D S S      S D    LKLG+  +  ED   +   K  G     + S     K++++     QT  C V+GC+ DLS+ +DYHR+H++CE HSK P+V++ G ++RFCQQCSRFHCL EFDE KRSCR+RL  HN RR KP P
Sbjct:   84 NFTSETGESLPGEFAKGIDTSPSLELSFGSGDPVLGLKLGK-RTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNP 245          
The following BLAST results are available for this feature:
BLAST of CF417808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL13_ARATH2.022e-4653.40Squamosa promoter-binding-like protein 13 OS=Arabi... [more]
SPL18_ORYSJ1.958e-4148.02Squamosa promoter-binding-like protein 18 OS=Oryza... [more]
SPL16_ORYSJ3.126e-3947.47Squamosa promoter-binding-like protein 16 OS=Oryza... [more]
SPL2_ORYSJ3.235e-3648.94Squamosa promoter-binding-like protein 2 OS=Oryza ... [more]
SPL19_ORYSJ1.359e-3467.00Putative squamosa promoter-binding-like protein 19... [more]
SPL14_ARATH5.345e-3144.51Squamosa promoter-binding-like protein 14 OS=Arabi... [more]
SPL3_ORYSJ1.555e-3047.52Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]
SPL3_ORYSI1.555e-3047.52Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]
SPL16_ARATH2.031e-3044.05Squamosa promoter-binding-like protein 16 OS=Arabi... [more]
SPL2_ARATH2.246e-2944.17Squamosa promoter-binding-like protein 2 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-738 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417808 ID=CF417808; Name=CF417808; organism=Citrus sinensis; type=EST; length=683bp
GAATCAATGTCAGTGAATAAATGGCTGCAAAGAGAAACCAGTCTCCATAT
GCTGAACCTGTCTTGAAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAG
AAGGTGTGGAGGGAATTAATTAAAGAATAAAGTCCAACTCTTCAATTGTT
GGAGTTTATGGACTGGAACTTGAAACCAGCTTGGGATTTTACTGAATTTG
AGCAAGAAGCTATTCCTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGG
ACAANNGGGAATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTC
GGCTGAAGATTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGG
AGTCTCCTTCACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAAT
GGAAGCCAGACTGCGTCATGTCTTGTTGATGGGTGTGACTCGGACCTTAG
TAATTGTAGGGATTACCATAGGCGCCATAAGGTGTGTGAGCTCCACTCGA
AGACGCCTCAGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAA
TGCAGCAGATTTCATTGCCTGGAGGAGTTTGATGAAGGGAAGAGAAGCTG
CAGGAAACGTCTTGATGGGCACAACAGAAGACGANGGAAACCTCAGCCAG
ATCAGCTGTCACGTACTGGAACCTTTTTGTCCA
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