CF417810

Overview
NameCF417810
Unique NameCF417810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417810 vs. ExPASy Swiss-Prot
Match: CPL2_ARATH (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.049e-30
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    7 LQEIGKRCSSKVQFRXXVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVAYITPRSGAMDRDFDKLSLENENGFLWDTIISESNEGLGED 324
            LQEIG+RC SKV+FR  +ST+K+LQFSVEVLFTGEKIG+GM KT+KDA QQAAENAL  LAEKYVA++ P    + R+ +K   EN+NGFLW++    SN+GL E+
Sbjct:  662 LQEIGRRCGSKVEFRTVISTNKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSLAEKYVAHVAP----LARETEK-GPENDNGFLWESSEDVSNKGLEEE 762
The following BLAST results are available for this feature:
BLAST of CF417810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CPL2_ARATH5.049e-3063.21RNA polymerase II C-terminal domain phosphatase-li... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-740 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417810 ID=CF417810; Name=CF417810; organism=Citrus sinensis; type=EST; length=628bp
GGTGTGCTACAGGAAATTGGAAAGAGGTGCAGCTCCAAGGTCCAGTTCAG
GNCTGNTGTAAGCACGAGTAAGGATTTACAATTTTCTGTTGAGGTTTTGT
TTACTGGTGAAAAGATAGGCGTTGGAATGGGTAAGACAAGGAAGGATGCT
CAACAACAAGCTGCTGAGAATGCCCTTCATTACTTGGCAGAAAAGTATGT
AGCATATATCACACCCCGTTCTGGAGCAATGGACAGAGATTTCGACAAGC
TTTCTCTTGAAAATGAAAACGGATTTCTGTGGGACACCATCATTTCAGAA
TCAAATGAAGGGCTGGGAGAAGACGGGTTACGCAAGGAAAGCACTCCTGA
GGCTTCTGAAGTTGAACCTGGGAGTACCTATGCCAGTTTGGGGAATCAGC
AAGTGCAAAAGCGTCCCAATGTCCCCAAGTAGGGAAGATAGGAGTGGAGG
ACGGACTCATCTCAATTAGTTCTTTTGGGATTATCAAAACTTATTCCGAG
CAAAAGGTTGAAAGACGAACCACCGCNGACCTAGATAAACTTGGTCTTTC
AGAACACTATTTGGCCTTTTGAGTTTTTGAACATGCAGATTCTTGCATCC
CCCAAGCAGAGCTGAAGTTGGCTCATCT
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