CF417813

Overview
NameCF417813
Unique NameCF417813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417813_ssr225 microsatellite CF417813_ssr225:225..236. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2833 contig Csv1_Contig2833:6..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417813 vs. ExPASy Swiss-Prot
Match: C19L2_MOUSE (CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  291 GRAD-DEYDFEDGPSRKSQKKR--GANDNKGAERAIARR--IMTQQERCLFCFENPNRPRHLVVAIANFTYLMLPQWQSVVPGHCCILPVQHELATRTVDSHVWDEIR 599
            G++D D Y  +D    K+ +K   G  +     RAIA    +  +  +CL+CF++   P+HL+VAI    YL LP +QS+  GHC I+P+QH  A   +D  VW+EI+
Sbjct:  620 GKSDEDNYTLDDMFVSKAAEKEHLGKKEESQRRRAIAEHQSLAAKMAKCLYCFDSSQFPKHLIVAIGVKVYLCLPSFQSLTEGHCFIVPLQHHQAATVLDEDVWEEIQ 727          
BLAST of CF417813 vs. ExPASy Swiss-Prot
Match: C19L2_HUMAN (CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  291 GRADDEYDFEDGP--SRKSQKKR-GANDNKGAERAIA--RRIMTQQERCLFCFENPNRPRHLVVAIANFTYLMLPQWQSVVPGHCCILPVQHELATRTVDSHVWDEIR 599
            G+ D +Y   D    S+ ++++R G  +    ++AIA  R +  Q E+CL+CF++   P+HL+VAI    YL LP  +S+  GHC I+P+QH  A   +D  +W+EI+
Sbjct:  623 GKTDGDYYTLDDMFVSKAAERERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQ 730          
BLAST of CF417813 vs. ExPASy Swiss-Prot
Match: C19L2_DANRE (CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  291 GRAD-DEYDFEDG-PSRKSQKKR-GANDNKGAERAI--ARRIMTQQERCLFCFENPNRPRHLVVAIANFTYLMLPQWQSVVPGHCCILPVQHELATRTVDSHVWDEIR 599
            GR D D Y  +D   S  +QK+R G ++ +   +A+   RR+  + E+C  CF++   P+HL++A+    YL LP   S+  GHC I+PVQH  A   +D  +W EI+
Sbjct:  694 GRTDGDNYTLDDMFVSSAAQKERAGRDEERQRNKAVQETRRLAGRMEKCPHCFDSAELPKHLIIAVGTKVYLCLPNSVSLTEGHCLIVPVQHHTAATGLDEDIWGEIQ 801          
BLAST of CF417813 vs. ExPASy Swiss-Prot
Match: C19L2_XENTR (CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.320e-13
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  303 DEYDFEDGPSRKSQKKRGANDNKGAERAIA----RRIMTQQERCLFCFENPNRPRHLVVAIANFTYLMLPQWQSVVPGHCCILPVQHELATRTVDSHVWDEIR 599
            D Y  +D    K+ KK   +  +  ER  A    R +    E+C FCF+N   P+HL+VAI    YL LP   S+  GHC I+P+QH  A+  +D  +++EI+
Sbjct:  663 DYYTLDDMFVTKAAKKEHTDKEEERERMQAMHEHRSLTATMEKCRFCFDNAELPKHLIVAIGTKVYLCLPNHLSLTEGHCLIVPLQHHTASTLLDEDIYNEIQ 765          
The following BLAST results are available for this feature:
BLAST of CF417813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
C19L2_MOUSE1.606e-1437.96CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE... [more]
C19L2_HUMAN1.606e-1437.04CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE... [more]
C19L2_DANRE1.360e-1337.04CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=... [more]
C19L2_XENTR2.320e-1336.89CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf1... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-743 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417813 ID=CF417813; Name=CF417813; organism=Citrus sinensis; type=EST; length=604bp
CTTGGACCCCTCTTTCTTTCTATCTCTCTCTTCTCTCTAAAATCTCAAAG
AGCTGTCCTCTCTTAATCCAATTTGGGAACAGAANAGCCTCTGGTCTTCG
GATTCAGCAAGAAGTTGAGAAAATGAAGGTAAAGCAGGGTGCGGCTGATA
ATTCTACTAAACATCAAGGTGTTGGAAGCTCGGGCAGGCATGTTATTTAT
GATTTGTCTGTTCGGAAAAGGAAGGATGATGATGATACTGATAGGAATCT
AGCCCAAAAGATAATGCATAATAAACAATACAGTATATCTGGTCGGGCCG
ATGATGAATATGATTTTGAAGATGGTCCAAGTCGAAAATCCCAGAAGAAG
AGAGGAGCAAATGACAATAAGGGTGCTGAAAGAGCTATTGCAAGACGTAT
AATGACTCAACAAGAGCGCTGCCTGTTTTGCTTTGAGAATCCGAACCGGC
CAAGACACCTTGTTGTGGCAATAGCAAATTTTACTTATTTGATGTTGCCA
CAGTGGCAGTCTGTCGTGCCTGGTCATTGCTGCATCTTGCCAGTGCAGCA
TGAGTTGGCGACTAGAACCGTTGACAGTCATGTGTGGGATGAAATTCGTA
ACTT
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