CF417814

Overview
NameCF417814
Unique NameCF417814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417814 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.127e-29
Identity = 72/158 (45.57%), Postives = 95/158 (60.13%), Query Frame = -1
Query:  190 ERSQEYVSSSTTTKQLLDEYQRRLKIDLXSSQYEKMQKNLKNLKEVNINLKKEIRQRLGEXXXXXXXXXXXXLEQDVDNCLRIIRERKLRAISGQIVTPXXXXXXXXXXXXXXRNGFIINAKEEDXPYELVDNEGHYDSVIRFQNGGPGIFXXRLXPN 663
            ++  EY+S +T TKQL D+YQ+ + +DL SS YEKMQ++LK L EVN NL++EIRQR+GE            L +D+DN L++IRERK + IS QI T                  F  +A+ ED  + LVDNEG Y+SV+ F NGGP I   RL  N
Sbjct:   52 QKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEF--DARREDPHFGLVDNEGDYNSVLGFPNGGPRIIALRLPTN 207          
BLAST of CF417814 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.601e-27
Identity = 72/165 (43.64%), Postives = 95/165 (57.58%), Query Frame = -1
Query:  157 EYVSSSTTTKQLLDEYQRRLKIDLXSSQYEKMQKNLKNLKEVNINLKKEIRQRLGEXXXXXXXXXXXXLEQDVDNCLRIIRERKLRAISGQIVTPXXXXXXXXXXXXXXRNGFIINAKEEDXPYELVDNEGHYDSVIRFQNGGPGIFXXRLXPNEXLSSQXXSIH 651
            E++S S TTKQL D YQ+ + +DL +S YEKMQ+ L+ LKEVN NL+KEIRQR+GE            L ++VDN L++IRERK + I  QI T                  F  +A++ED PY LV+ EG Y+SV+ F NGG  I   RL PN    +    +H
Sbjct:   56 EFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEF--DARQED-PYGLVEQEGDYNSVLGFPNGGHRILALRLQPNHHQPNHHHHLH 217          
BLAST of CF417814 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = -1
Query:  190 EYVSSSTTTKQLLDEYQRRLKIDLXSSQYEKMQKNLKNLKEVNINLKKEIRQRLGEXXXXXXXXXXXXLEQDVDNCLRIIRERKLRAISGQIVTPXXXXXXXXXXXXXXRNGFIINAKEEDXPYELVDNEGHYDSVIRFQNGGPGIFXXRLXPN 651
            EY+S +TTTK+++D YQ    +D+ ++QYE+MQ+  + L E N NL+ +I+QRLGE            LE +++N  +++RERK +++  QI T                +   + A  ED  Y LVDN G YDSV+ +Q  G   +  R   N
Sbjct:   56 EYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRA--EDPHYGLVDNGGDYDSVLGYQIEGSRAYALRFHQN 207          
BLAST of CF417814 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = -1
Query:  370 EYVSSSTTTKQLLDEYQRRLKIDLXSSQYEKMQKNLKNLKEVNINLKKEIRQRLGEXXXXXXXXXXXXLEQDVDNCLRIIRERKLRAISGQIVT 651
            E+ S ST  K + D YQ+ +   L   QYE MQ+ L +LK++N NL+ EIRQR+GE            LEQ+VD  L+ +R RK   I+ Q  T
Sbjct:   56 EFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTET 149          
The following BLAST results are available for this feature:
BLAST of CF417814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DEFA_ANTMA2.127e-2945.57Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MADS1_PETHY2.601e-2743.64Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
AP3_ARATH1.528e-1935.06Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD16_ORYSJ3.086e-1241.49MADS-box transcription factor 16 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-744 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417814 ID=CF417814; Name=CF417814; organism=Citrus sinensis; type=EST; length=663bp
GTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCNCNAAAGGAAGGGTATAAA
TTAAGAACNCNAGACCNGTGTAATTAAAACATCNCCCTTGGAAACTGATG
ATAAAANAAAATGACACTATCTTTCAAACAGTTCATCTAATTCCCNCATA
CTACTCGTGGATACTCNTCCNCTGNGAACTTAAGGNTTCGTTAGGNTGCA
AGCGCNAGGNAAATATGCCAGGACCTCCATTCTGGAATCTGATAACAGAA
TCATAATGCCCCTCATTATCAACTAACTCATAGGGGNGATCTTCCTCTTT
TGCATTAATGATAAATCCATTCCGNANTTTTCTGNTCTCCTCTTCCTCTC
TTCTTACCTTTTTCCTGGGGGTAACAATCTGACCCGATATCGCTCGAAGC
TTGCGTTCACGGATAATCCTCAAGCAATTATCCACATCTTGCTCAAGATC
AGACAATTTCTTCAAGCTCAGATCATTCAAACTTTCACCCAACCTTTGCC
TAATTTCCTTCTTCAGATTTATATTCACTTCTTTCAGATTCTTCAGATTC
TTTTGCATTTTCTCATATTGAGAACTCCNAAGATCGATCTTTAATCTCCT
CTGATACTCATCAAGCAACTGCTTTGTTGTAGTGGAGGAGCTAACGTATT
CCTGGGACCTTTC
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