CF417815

Overview
NameCF417815
Unique NameCF417815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11388 contig Csv1_Contig11388:44..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417815 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.196e-39
Identity = 80/170 (47.06%), Postives = 108/170 (63.53%), Query Frame = 1
Query:  130 VRTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFL 639
            +R IPG YG P +GPI DRLDYF+ QG E FF+ R++K+KSTV+R N+PP    F+  NP VI +LD KSF  LFDM  VEKK++  G +MPS + TGG R+ +YLD SEP H +LK    + +K      + E  SS   L + VE +L+ K   ++  P ++  FNFL
Sbjct:   72 IRQIPGDYGLPGIGPIQDRLDYFYNQGREEFFKSRLQKYKSTVYRANMPPG--PFIASNPRVIVLLDAKSFPVLFDMSKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPNHTKLKQLLFNLIKNRRDYVIPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAAFNFL 239          
BLAST of CF417815 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 8.092e-39
Identity = 82/170 (48.24%), Postives = 108/170 (63.53%), Query Frame = 1
Query:  130 VRTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFL 639
            +R IPG+YG P++GPI DR DYF+ QG E FF+ RI K+ STV+R N+PP    F+  NP V+A+LD KSF  LFD++ VEKK++  G +MPS + TGG R+ +YLD SEPKH +LK      LK S      E  ++   LFD++EKELS K    +        FNFL
Sbjct:   54 IRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPG--AFIAENPQVVALLDGKSFPVLFDVDKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFL 221          
BLAST of CF417815 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.156e-35
Identity = 78/171 (45.61%), Postives = 109/171 (63.74%), Query Frame = 1
Query:  130 VRTIPGSYGWPLLGPISDRLDYFWFQGP-ETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFL 639
            +R IPGSYG P   PI DRL+YF+  G  + +FR R++K++STVFR N+PP    F++ NP VI +LD KSF  LFD+  VEKK++  G +MPS K TGG RV +YLD SEP+HAQLK      LK SS   + +  ++   LF+ +E EL++    ++    ++  F FL
Sbjct:    8 LREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPG--PFVSSNPKVIVLLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFL 176          
BLAST of CF417815 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.755e-31
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  133 RTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELS 582
            R +PGSYG P +  + DRLD+++ QG + +F  R E++ STV R N+PP    F+  +P V+A+LD KSF  LFD+  VEK+++  G FMPS   TGG RV AYLD SEP HA++K   +  L      +V    S+   L DTVE +L+
Sbjct:   10 RPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPG--PFMARDPRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLA 157          
BLAST of CF417815 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.606e-26
Identity = 66/171 (38.60%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  130 VRTIPGSYGWPLLGPISDRLDYFWFQGP-ETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFL 639
            +R +PG YG P++G I DR +YF+  G  + FF  R+  H+STV R N+PP    F+  +P V+A+LD  SF  LFD  +V+K ++  G FMPS   TGG RV +YLD SEP HA LK      L    +  + +       LF  +E +L+      + V      F FL
Sbjct:   47 LRKVPGDYGPPVVGAIRDRYEYFYGPGGRDGFFAARVRAHRSTVVRLNMPPG--PFVARDPRVVALLDAASFPVLFDTSLVDKTDLFTGTFMPSTDLTGGYRVLSYLDPSEPNHAPLKTLLFYLLSHRRQQVIPKFREVYGDLFGLMENDLARVGKADFGVHNDAAAFGFL 215          
BLAST of CF417815 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.856e-26
Identity = 62/151 (41.06%), Postives = 88/151 (58.28%), Query Frame = 1
Query:  130 VRTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKHK-STVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKEL 579
            +R IPG YG P   P+ DRLDYF+FQG E +FR R+ +H  +TV R N+PP    F++ NP V+A+LD +SF  L D  +V+K + L G +MPS    GG R  A+LD ++P+HA++K   M               ++   +FD VE  L
Sbjct:   29 IREIPGGYGVPFFSPLRDRLDYFYFQGAEEYFRSRVARHGGATVLRVNMPPG--PFISGNPRVVALLDARSFRVLLDDSMVDKADTLDGTYMPSRALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDAVEAGL 177          
BLAST of CF417815 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.340e-25
Identity = 62/151 (41.06%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  130 VRTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKHK-STVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKEL 579
            +R IPG YG P L P+ DRLDY++FQG + FFR R+ +H  +TV R N+PP    FL  +P V+A+LD +SF  L D  +V+K + L G FMPS+   GG R  A+LD ++P+HA++K   M               ++   +FD V+  L
Sbjct:   29 IREIPGGYGVPFLSPLRDRLDYYYFQGADEFFRSRVARHGGATVLRVNMPPG--PFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTFMPSLALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDEVDAGL 177          
The following BLAST results are available for this feature:
BLAST of CF417815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74_LINUS6.196e-3947.06Allene oxide synthase, chloroplastic OS=Linum usit... [more]
CP74A_ARATH8.092e-3948.24Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
C74A2_PARAR4.156e-3545.61Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A2_ORYSJ4.755e-3144.67Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A1_ORYSJ4.606e-2638.60Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
C74A3_ORYSJ7.856e-2641.06Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
C74A4_ORYSJ1.340e-2541.06Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-745 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417815 ID=CF417815; Name=CF417815; organism=Citrus sinensis; type=EST; length=640bp
CTCAAAATGAATACCTCCATGATGATGGTAAACTCAATGAGCGTATCANC
AGANATGCCCTCATCATCGCCCTTCCAGTTACAGTCACTCTCCACACCCA
CTTCATCACCACCGTCCACGTCGCTCCCGGTCCGAACAATCCCCGGATCC
TACGGCTGGCCCCTTCTGGGCCCCATCTCCGACCGCCTCGACTACTTCTG
GTTCCAGGGTCCTGAAACTTTCTTCAGAAAACGCATTGAAAAGCACAAGA
GCACGGTGTTCCGTACAAACATACCACCCACGTGGCCTTTGTTTCTCAAC
GTAAACCCCAATGTCATTGCCGTTCTTGACTGCAAATCTTTTGCTCATCT
CTTTGATATGGAGATTGTGGAGAAGAAAAATATTCTTGTTGGTGATTTCA
TGCCCAGTGTTAAGTTTACAGGAGGCTTGAGGGTTAGTGCTTATCTTGAT
ACTTCTGAGCCTAAACATGCCCAGCTCAAAGGCTTCGCCATGGACACTCT
GAAAAGAAGCTCAAAATTATGGGTATCAGAAGTGGTATCAAGTCTGGACA
CACTGTTCGACACCGTCGAGAAGGAACTCTCCGAAAAGAACAGCATAAGC
TACATGGTCCCTTTACAAAAATGCGTCTTTAACTTCCTCT
back to top