CF417818

Overview
NameCF417818
Unique NameCF417818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 7.332e-45
Identity = 93/103 (90.29%), Postives = 95/103 (92.23%), Query Frame = 2
Query:  167 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            +GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   45 AGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.633e-44
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 2
Query:  167 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   35 AGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 178.718 bits (452), Expect = 2.133e-44
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 2
Query:  170 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 4.753e-44
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 2
Query:  167 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            S D        S+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 SSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 4.753e-44
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 2
Query:  167 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            +G+        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 AGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 8.107e-44
Identity = 90/103 (87.38%), Postives = 95/103 (92.23%), Query Frame = 2
Query:  167 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.059e-43
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 2
Query:  200 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.806e-43
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 2
Query:  170 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.806e-43
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 2
Query:  170 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF417818 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.806e-43
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 2
Query:  200 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 475
            S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
The following BLAST results are available for this feature:
BLAST of CF417818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_GOSHI7.332e-4590.29Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC1.633e-4489.32Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B11_ARATH2.133e-4490.20Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B3_MEDTR4.753e-4488.35Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B1_MEDTR4.753e-4488.35Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B1_ARATH8.107e-4487.38Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B_CAPAN1.059e-4397.83Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B7_ARATH1.806e-4388.24Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH1.806e-4388.24Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B3_ARATH1.806e-4397.83Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-748 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417818 ID=CF417818; Name=CF417818; organism=Citrus sinensis; type=EST; length=631bp
AGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCNGAGG
NGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCG
GTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCT
TCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGA
GCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACAT
CCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCAT
CAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGT
ACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGA
CTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAA
AGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCG
GTGGAATTCNGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTA
ATTTTACTAGATGAAGTCGTTTTTNATGTTTTGTGTTTTCAAATCTTTGG
TGGATTTTTTAGGGTTTGGTTGGGATGTACT
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