CF417821

Overview
NameCF417821
Unique NameCF417821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.744e-68
Identity = 123/139 (88.49%), Postives = 133/139 (95.68%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            EEEKWVPVTKLGRLV+EGKI  +EQIYLHSLP+KE QIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG+PHTVPCKVTGKCGSVTVR
Sbjct:   41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 179
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 5.000e-67
Identity = 124/139 (89.21%), Postives = 130/139 (93.53%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            EEEKWVPVTKLGRLV  G I+ +EQIYLHSLP+KE QIID LIG  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR
Sbjct:   50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 188

HSP 2 Score: 22.7126 bits (47), Expect = 5.000e-67
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2 
Query:   41 MAERGGERG 67
            MAERGGERG
Sbjct:    1 MAERGGERG 9
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 2.784e-66
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            EE KWVPVTKLGRLV + KI  LEQIYLHSLP+KE QIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR
Sbjct:   49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 187
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 2.784e-66
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            EE KWVPVTKLGRLV + KI  LEQIYLHSLP+KE QIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR
Sbjct:   49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 187
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 2.357e-65
Identity = 117/140 (83.57%), Postives = 132/140 (94.29%), Query Frame = 3 
Query:  147 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            E+ ++WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV+VR
Sbjct:   38 EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVR 177
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 8.383e-63
Identity = 114/139 (82.01%), Postives = 130/139 (93.53%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            E+++WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS+IPVRRGYWGNKIG+PHTVPCKVTG+CGSV VR
Sbjct:   41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVR 179
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.185e-62
Identity = 112/139 (80.58%), Postives = 129/139 (92.81%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            E+++W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR
Sbjct:   56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVR 194
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 3.185e-62
Identity = 112/139 (80.58%), Postives = 129/139 (92.81%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            E+++W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR
Sbjct:   56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVR 194
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.434e-62
Identity = 112/139 (80.58%), Postives = 129/139 (92.81%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            E+++W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR
Sbjct:   56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVR 194
[Close]
BLAST of CF417821 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.434e-62
Identity = 112/139 (80.58%), Postives = 129/139 (92.81%), Query Frame = 3 
Query:  150 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEXQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVR 566
            E+++W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR
Sbjct:   56 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVR 194
The following BLAST results are available for this feature:
BLAST of CF417821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS24_ARATH1.744e-6888.4940S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH5.000e-6789.2140S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH2.784e-6688.4940S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH2.784e-6688.4940S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_DROME2.357e-6583.5740S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_ICTPU8.383e-6382.0140S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_RAT3.185e-6280.5840S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE3.185e-6280.5840S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN5.434e-6280.5840S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]
RS2_BOVIN5.434e-6280.5840S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-751 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417821 ID=CF417821; Name=CF417821; organism=Citrus sinensis; type=EST; length=574bp
AAACCCTAGCTTCAAACCCTAAACCCACAAGAACAAAACCATGGCTGAAC
GAGGTGGCGAGCGCGGTGCATTCCNGACGCGGCTTCGGCCGTGGTGGGCG
GGGCGACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGG
AAGAAGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAA
GGCAAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAA
GGAGNNTCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGG
TCATGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACG
AGGTTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCT
TGGCGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCA
TATTGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAAC
AAGATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGG
CAGTGTCACCGTGAGGGATGGTTC
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