CF417823

Overview
NameCF417823
Unique NameCF417823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417823 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 61/146 (41.78%), Postives = 93/146 (63.70%), Query Frame = 2 
Query:    2 PSTKITIHGXIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSES---PW 430
            P+ ++ I      +   A IA+GSEMSGG+ +V AE++   NS  GIRIKT  GRGGYV++I +  +T+  +  A   TG++G H D+ YDP A P+I+ I  ++++ ENV MA +LEGI  D F  IC+SN+ ++  +++   PW
Sbjct:  290 PTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPW 435
The following BLAST results are available for this feature:
BLAST of CF417823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI4.629e-2841.78Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-753 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417823 ID=CF417823; Name=CF417823; organism=Citrus sinensis; type=EST; length=622bp
GCCAAGTACAAAAATTACCATCCATGGANTCATTGGAGAAACTAAATTGG
GTGCGGGGATTGCAATAGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTT
CATGCAGAGAACCTGTACTTTTTCAACTCAGTCAGGGGTATTAGGATAAA
GACATCTCCTGGAAGGGGTGGCTATGTGAGAAATATCTCTATCTCAAATG
TGACCTTAAATCACGTAGATGTAGCTATAATATTTACTGGTCACTTTGGG
GAGCATCCAGATGATTCGTATGATCCAAGTGCTCTTCCCATAATAGAAAG
GATTACCATAAAAAATGTCATTGGGGAGAATGTAAAAATGGCAGGCCAGC
TAGAAGGTATAGAGGGGGACACTTTTCGTTACATTTGCTTGTCAAACATT
AAGCTCAATGGAGTTTCAGAGTCTCCATGGGAATTGCTCCTATATTCAAG
GATATTCTGACTTGGTTTTCCCAGAAACCTGTGATCCTCTGAAGGAGAGT
ATCTTTCCCATGCATCACTTAGATTGTTACGATCTATCCNATCATTTTAG
GAGTTCAAGAAATCAAAAAAGACTTGCTCGCTTATTATCTTGGTAAATAA
TGGAATCTTGGCATTTTATCTC
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