CF417833

Overview
NameCF417833
Unique NameCF417833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.191e-61
Identity = 116/141 (82.27%), Postives = 129/141 (91.49%), Query Frame = 3
Query:    3 MDFRIMGLDSSPLFSTLQHMMEMGADHSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 425
            MDFR+MGL+S PLF TLQHMM+M  D + DNK+ NAPT +YVRDAKAMAATPADVKEYPNSYVF +DMPGLKSGDIKVQVEDDN+LLI GERKR+EEK+GAKY+RMERRVGK MRKFVLPENAN +AISAVCQDGVL+VTV
Sbjct:    1 MDFRVMGLES-PLFHTLQHMMDMSEDGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTV 140          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.397e-58
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 3
Query:    3 MDFRIMGLDSSPLFSTLQHMMEMGADHSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 425
            MD R++G+D++PLF TL HMME     +A   S NAP++ YVRDAKAMAATPADVKEYPNSYVF+VDMPGLKSGDIKVQVE+DNVLLISGERKREEEK+GAK++RMERRVGKFMRKF LPENAN +AISAVCQDGVLTVTV
Sbjct:    1 MDLRLLGIDNTPLFHTLHHMME-----AAGEDSVNAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTV 136          

HSP 2 Score: 21.9422 bits (45), Expect = 1.397e-58
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  448 PRSPXTIEVKIA 483
            P+ P TIEVK+A
Sbjct:  144 PKKPKTIEVKVA 155          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.909e-54
Identity = 107/137 (78.10%), Postives = 124/137 (90.51%), Query Frame = 3
Query:   18 MGLDSSPLFSTLQHMMEMGADHSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 428
            M LDS PLF+TL H+M++  D +   K+ NAPTRTYVRDAKAMAATPADVKE+PNSYVF+VDMPG+KSGDIKVQVED+NVLLISGERKREEEK+G KY++MERR+GK MRKFVLPENAN+EAISA+ QDGVLTVTV+
Sbjct:    1 MDLDS-PLFNTLHHIMDLTDDTT--EKNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVN 134          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.305e-51
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 3
Query:    3 MDFRIMGLDSSPLFSTLQHMMEMGADHSADNKSSN--APTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 428
            MD R+MG D  PLF    H+M    D++ D+KSSN  AP+RT++ DAKAMAATPADVKEYPNSYVFI+DMPGLKSGDIKVQV+ DNVL ISGERKRE EEK+GAKYVRMERRVGK MRKFVLPENAN E I+AVCQDGVLTVTV+
Sbjct:    1 MDLRLMGFDH-PLF---HHIM----DYAGDDKSSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVE 137          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.416e-50
Identity = 99/139 (71.22%), Postives = 118/139 (84.89%), Query Frame = 3
Query:   15 IMGLDSSPLFSTLQHMMEMGADHSADNKSSNA-PTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 428
            +MG D  PL   L +++E   D++  NKS+N+ P+R YVRDA+AMAATPADVKE PNSYVFIVDMPGLKSGDIKVQVE DNVL+ISG+R REEEK+G KYVRMERR+GKFM+KF LPE+AN + ISA+CQDGVLTVTV+
Sbjct:    6 LMGFD--PLLRNLHYILEATDDNTTGNKSNNSGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVE 142          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.638e-47
Identity = 100/149 (67.11%), Postives = 115/149 (77.18%), Query Frame = 3
Query:    3 MDFRIMGLDS----SPLFSTLQHMMEMGADHS-ADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGER--KREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 428
            MD R  GL +      L ST+Q M++   DH  A       P R YVRDAKAMAATPADVKEYPNSYVFI DMPG+K+ +IKVQVEDDNVL++SGER  + ++EKDG KY+RMERRVGKFMRKFVLPENANVEAI+AV QDGVL VTV+
Sbjct:    1 MDLRNFGLSNFGLEPQLLSTIQDMLDFADDHDRAGRAPPEQPIRAYVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVE 149          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.401e-46
Identity = 92/147 (62.59%), Postives = 120/147 (81.63%), Query Frame = 3
Query:    3 MDFRIMGLDSSPLFSTLQHMMEM---GADHSADNK--SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 428
            MD  + GL++ PL + LQH++++    A    DNK  S  + TRTYVRDA+AMAATPADVKE P +Y F+VDMPGL +GDI+VQVED+ VL++SGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+
Sbjct:    1 MDAVMFGLET-PLMAALQHLLDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVE 146          

HSP 2 Score: 21.9422 bits (45), Expect = 8.401e-46
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  448 PRSPXTIEVKIA 483
            P+ P TIEVK+A
Sbjct:  153 PKKPKTIEVKVA 164          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.995e-45
Identity = 92/145 (63.45%), Postives = 115/145 (79.31%), Query Frame = 3
Query:    3 MDFRIMGLDSSPLFSTLQHMMEM---GADHSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 428
            MD R+ GL++ PL   LQH++++    A    D      PTRTYV DA+AMA TPADVKE P +Y F+VDMPGL +GDIKVQVED+ VL+ISGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+++ ISAVC+DGVLTVTV+
Sbjct:    1 MDGRMFGLET-PLMVALQHLLDVPDGDAGAGGDKAGGGGPTRTYVADARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVE 143          

HSP 2 Score: 21.9422 bits (45), Expect = 6.995e-45
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  448 PRSPXTIEVKIA 483
            P+ P TIEVK+A
Sbjct:  150 PKKPKTIEVKVA 161          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.941e-44
Identity = 88/137 (64.23%), Postives = 112/137 (81.75%), Query Frame = 3
Query:   18 MGLDSSPLFSTLQHMMEMGADHSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 425
            M L   P+ S L+ M+E+  DH+ + K+ N P+R Y+RDAKAMAATPADV E+PN+Y F+VDMPG+K  +IKVQVE+DNVL++SGER+RE +E +G KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV
Sbjct:    1 MDLGRFPIISILEDMLEVPEDHN-NEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTV 136          
BLAST of CF417833 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.301e-43
Identity = 89/149 (59.73%), Postives = 120/149 (80.54%), Query Frame = 3
Query:    3 MDFRIMGLDSSPLFSTLQHMMEM--GADHSADNK-SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKR----EEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 428
            M+  + GL++ PL + LQH++++  G   +A  + ++  PTR YVRDA+AMAATPADVK+ P +Y F+VDMPGLKS DIKVQVE++ +L+ISGER+R    EE+++  KY+RMERR+GKFMRKFVLP+NA+V+ ISAVCQDGVLTVTV+
Sbjct:    1 MESAMFGLET-PLMTALQHLLDIPDGEGGAAGKQGATGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVE 148          

HSP 2 Score: 21.9422 bits (45), Expect = 6.301e-43
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  448 PRSPXTIEVKIA 483
            P+ P TIEVK+A
Sbjct:  155 PKKPKTIEVKVA 166          
The following BLAST results are available for this feature:
BLAST of CF417833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HSP21_SOYBN4.191e-6182.2717.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_SOLPE1.397e-5879.4317.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA2.909e-5478.1017.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI2.305e-5175.8617.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_HELAN7.416e-5071.2217.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP22_IPONI2.638e-4767.1118.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_MAIZE8.401e-4662.5917.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_MAIZE6.995e-4563.4517.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS176_ARATH7.941e-4464.2317.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP18_ORYSJ6.301e-4359.7318.0 kDa class II heat shock protein OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-763 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417833 ID=CF417833; Name=CF417833; organism=Citrus sinensis; type=EST; length=628bp
GAATGGATTTCAGAATCATGGGTTTGGACTCATCGCCACTCTTTTCAACT
CTGCAGCACATGATGGAGATGGGGGCGGACCACTCCGCTGACAACAAGTC
ATCCAACGCGCCGACGCGCACGTACGTGAGAGACGCCAAGGCAATGGCGG
CGACGCCTGCGGACGTGAAGGAGTATCCGAACTCGTACGTGTTCATCGTC
GATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAGGACGA
CAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAAAGATG
GGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGAGGAAA
TTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTGTGTCA
GGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCGCCGGAGCCCA
AGAAGCCCAAGNACCATTGAGGTTAAGATTGCTTGAACTTTGAGAGAGAG
AATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTGCCGGNTGNTAT
GAATAATTTTGCTTGTGGGTTTGACGGNACTATGCCTCTGTAATCTCCTC
TTCCTTTTTCTTTTTTTCTCTTTCTTCC
back to top