CF417838

Overview
NameCF417838
Unique NameCF417838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.337e-49
Identity = 88/108 (81.48%), Postives = 99/108 (91.67%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VPV+Y+RVPC RRGGIR TINGHSYFNLVLITNVGGAGDVH+ +IKGSRT WQ MSRNWGQNWQSN+YLNGQ+LSFKVTTSDGRTV S+N APA WS+G+T++G QFR
Sbjct:  142 VPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.207e-49
Identity = 89/108 (82.41%), Postives = 98/108 (90.74%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VPVAY+RVPC RRGGIR TINGHSYFNLVLITNVGGAGDVH+  +KGSRTGWQ MSRNWGQNWQSN+YLNGQSLSFKVTTSDG+T+ S NVA A WSFG+T++GAQ R
Sbjct:  143 VPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.979e-48
Identity = 87/108 (80.56%), Postives = 98/108 (90.74%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VPV+Y+RVPC RRGGIR TINGHSYFNLVL+TNVGGAGDVH+V++KGSRT WQ MSRNWGQNWQSN  LNGQ+LSFKVT SDGRTV S N+APASWSFG+T++G QFR
Sbjct:  146 VPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.852e-46
Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            +PV Y+RV C R GGIR TINGHSYFNLVL+TNVGGAGDVH+VS+KGSRT WQ MSRNWGQNWQSN+YLNGQSLSF VTTSD R+V S+NVAP +WSFG+TY+G QFR
Sbjct:  147 IPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.200e-45
Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPV+Y+RVPC ++GGIR TINGHSYFNLVL+TNV G GDV +VSIKGS TGWQPMSRNWGQNWQSN+YL+GQSLSF+V  SDGRTVTS NV PA W FG+T+ G QF
Sbjct:  145 VPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.562e-45
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPV+++RVPC ++GG+R T+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA   W FG+T+ G QF
Sbjct:  140 VPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.562e-45
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPV+++RVPC ++GG+R T+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA   W FG+T+ G QF
Sbjct:  140 VPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.327e-44
Identity = 82/108 (75.93%), Postives = 97/108 (89.81%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPV+++RVPC ++GGIR TINGHSYFNLVLI+NVGGAGDVHAVSIKGS+T  WQ MSRNWGQNWQSN+Y+N QSLSF+VTTSDGRT+ S +VAP++W FG+TY G QF
Sbjct:  146 VPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.269e-43
Identity = 82/108 (75.93%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VPV Y+RV C R+GGIR TINGHSYFNLVLITNV GAGDV +VSIKG+ T WQ MSRNWGQNWQSN  L+GQ+LSFKVTTSDGRTV S N  P +WSFG+TY+G QFR
Sbjct:  145 VPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.614e-42
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPV Y+RV C ++GGIR TI GHSYFNLVL+TNVGGAGDV AVS+KGSR+GWQ MS NWG NWQ+   L+GQ LSF+VT SDGRTVTS NVAP+ WSFG+T+SG QF
Sbjct:  142 VPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
The following BLAST results are available for this feature:
BLAST of CF417838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP10_ARATH2.337e-4981.48Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH5.207e-4982.41Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH1.979e-4880.56Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA5_ARATH1.852e-4678.70Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA2_ORYSJ1.200e-4576.64Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSJ4.562e-4574.77Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI4.562e-4574.77Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA8_ARATH1.327e-4475.93Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP14_ARATH3.269e-4375.93Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP11_ORYSJ3.614e-4272.90Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-768 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417838 ID=CF417838; Name=CF417838; organism=Citrus sinensis; type=EST; length=650bp
TGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGCATCA
GGGTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCACCAAC
GTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTAGAAC
TGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGCAACA
CTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGATGGC
CGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTGGCCG
AACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAGAT
TGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGTATAT
TTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATTAATA
TAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGAAAA
AAAGGGGCTTATTTTAAAATGGCTTATTTTTTTTCATTTTGAATTGATTT
TTATGGNTGGCGTGGGGTGTCTAATTATGGGATCCTCTTATTATCTTGGG
GATCCTTTTTTTACCTTTCCTTTTTGGGGGGTTTTCTGTTGAAGTGCAAC
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