CF417838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.337e-49 Identity = 88/108 (81.48%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VPV+Y+RVPC RRGGIR TINGHSYFNLVLITNVGGAGDVH+ +IKGSRT WQ MSRNWGQNWQSN+YLNGQ+LSFKVTTSDGRTV S+N APA WS+G+T++G QFR Sbjct: 142 VPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 5.207e-49 Identity = 89/108 (82.41%), Postives = 98/108 (90.74%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VPVAY+RVPC RRGGIR TINGHSYFNLVLITNVGGAGDVH+ +KGSRTGWQ MSRNWGQNWQSN+YLNGQSLSFKVTTSDG+T+ S NVA A WSFG+T++GAQ R Sbjct: 143 VPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2) HSP 1 Score: 192.2 bits (487), Expect = 1.979e-48 Identity = 87/108 (80.56%), Postives = 98/108 (90.74%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VPV+Y+RVPC RRGGIR TINGHSYFNLVL+TNVGGAGDVH+V++KGSRT WQ MSRNWGQNWQSN LNGQ+LSFKVT SDGRTV S N+APASWSFG+T++G QFR Sbjct: 146 VPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.852e-46 Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 +PV Y+RV C R GGIR TINGHSYFNLVL+TNVGGAGDVH+VS+KGSRT WQ MSRNWGQNWQSN+YLNGQSLSF VTTSD R+V S+NVAP +WSFG+TY+G QFR Sbjct: 147 IPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 1.200e-45 Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPV+Y+RVPC ++GGIR TINGHSYFNLVL+TNV G GDV +VSIKGS TGWQPMSRNWGQNWQSN+YL+GQSLSF+V SDGRTVTS NV PA W FG+T+ G QF Sbjct: 145 VPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 4.562e-45 Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPV+++RVPC ++GG+R T+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA W FG+T+ G QF Sbjct: 140 VPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 4.562e-45 Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPV+++RVPC ++GG+R T+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA W FG+T+ G QF Sbjct: 140 VPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.327e-44 Identity = 82/108 (75.93%), Postives = 97/108 (89.81%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPV+++RVPC ++GGIR TINGHSYFNLVLI+NVGGAGDVHAVSIKGS+T WQ MSRNWGQNWQSN+Y+N QSLSF+VTTSDGRT+ S +VAP++W FG+TY G QF Sbjct: 146 VPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.269e-43 Identity = 82/108 (75.93%), Postives = 91/108 (84.26%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VPV Y+RV C R+GGIR TINGHSYFNLVLITNV GAGDV +VSIKG+ T WQ MSRNWGQNWQSN L+GQ+LSFKVTTSDGRTV S N P +WSFG+TY+G QFR Sbjct: 145 VPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 3.614e-42 Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPV Y+RV C ++GGIR TI GHSYFNLVL+TNVGGAGDV AVS+KGSR+GWQ MS NWG NWQ+ L+GQ LSF+VT SDGRTVTS NVAP+ WSFG+T+SG QF Sbjct: 142 VPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248 The following BLAST results are available for this feature:
BLAST of CF417838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417838 ID=CF417838; Name=CF417838; organism=Citrus sinensis; type=EST; length=650bpback to top |