CF417842

Overview
NameCF417842
Unique NameCF417842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIFH_TRISP (Macrophage migration inhibitory factor homolog OS=Trichinella spiralis PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   ++TN+K   V  S  LS  ++ V NI+ KP +YV + +     +SFGG+  PAA+G L+SIGG+ P  N+  SA +   L KKL +PK+R +I F +  G + GWNG+TF
Sbjct:    1 MPIFTLNTNIKATDVP-SDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIFH_TRITR (Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.278e-18
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP    STNV    +     L   +  +A ++GKPE+YV + + G   ++FGGT+ PA +G+L+S+GG+  + N+  SA +   L   L +P +R +I F D +GS+ G+NGSTF
Sbjct:    1 MPIFTFSTNVPSENISVD-FLKSTSKLIAGMLGKPESYVAVHINGGQKITFGGTDAPAGFGQLLSLGGVGGEKNRSHSAKLFKHLTDGLGIPGNRMYINFVDMRGSDVGYNGSTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIFH_BRUMA (Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1 PE=3 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 4.856e-18
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   I TN+  + + +S+ L +A++ VA  +GKPE+YV I + G   M FGG+EDP A   L SIG + P VN   +  +  +L  +L +PK+R +I+F D + S+  +NGSTF
Sbjct:    1 MPYFTIDTNIPQNSI-SSAFLKKASNVVAKALGKPESYVSIHVNGGQAMVFGGSEDPCAVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIEFVDIEASSMAFNGSTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIF_XENLA (Macrophage migration inhibitory factor OS=Xenopus laevis GN=mif PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   I TNV    V   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  +  +  IL K+L++P +R +I +YD   +N GWNGSTF
Sbjct:    1 MPVFTIRTNVCRDSVP-DTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIFH_WUCBA (Macrophage migration inhibitory factor homolog OS=Wuchereria bancrofti GN=MIF PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   I TN     + +S+ L +A + V   +GKPE+YV I + G  PM FGG+EDP     L SIG + P VN   +  +  +L  +L +PK+R +I+  D + S+  +NGSTF
Sbjct:    1 MPYFTIDTNKPQDSI-SSAFLKKAPNVVPKALGKPESYVSIHVNGGQPMVFGGSEDPCPVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIESVDIEASSMAFNGSTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIF_XENTR (Macrophage migration inhibitory factor OS=Xenopus tropicalis GN=mif PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   + TNV    +   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  S  +   L K++++P +R +I F+D   +N GWNGSTF
Sbjct:    1 MPTFTVCTNVCRDSMP-DTLLSDLTKLLAKATGKPAEYIAIHIMPDQMMSFGDSTDPCAVCSLSSIGKIGGPQNKSYSKLLCDYLTKQMNIPANRVYINFHDLNPANVGWNGSTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIF_CHICK (Macrophage migration inhibitory factor OS=Gallus gallus GN=MIF PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 8.571e-15
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   I TNV    V   S+L E T  +A   GKP  Y+ + +     MSFGG+ DP A   L SIG +    NK  +  +  ++ K L V   R +I ++D   +N GWNGSTF
Sbjct:    1 MPMFTIHTNVCKDAVP-DSLLGELTQQLAKATGKPAQYIAVHIVPDQMMSFGGSTDPCALCSLYSIGKIGGQQNKTYTKLLCDMIAKHLHVSADRVYINYFDINAANVGWNGSTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIF_RAT (Macrophage migration inhibitory factor OS=Rattus norvegicus GN=Mif PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    1 MPMFIVNTNVPRASVP-EGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTSDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIF_MOUSE (Macrophage migration inhibitory factor OS=Mus musculus GN=Mif PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    1 MPMFIVNTNVPRASVP-EGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of CF417842 vs. ExPASy Swiss-Prot
Match: MIF_PIG (Macrophage migration inhibitory factor OS=Sus scrofa GN=MIF PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 3
Query:   15 MPCLXISTNVKLHGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 359
            MP   ++TNV    V     LSE T  +   +GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWNGSTF
Sbjct:    1 MPMFVVNTNVPRASVP-DGFLSELTQQLVQAMGKPAQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRIYINYYDMNAANVGWNGSTF 114          
The following BLAST results are available for this feature:
BLAST of CF417842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIFH_TRISP1.365e-2042.61Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_TRITR1.278e-1838.26Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_BRUMA4.856e-1840.87Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENLA3.480e-1640.00Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIFH_WUCBA7.752e-1639.13Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENTR6.563e-1537.39Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIF_CHICK8.571e-1538.26Macrophage migration inhibitory factor OS=Gallus g... [more]
MIF_RAT1.909e-1436.52Macrophage migration inhibitory factor OS=Rattus n... [more]
MIF_MOUSE1.909e-1436.52Macrophage migration inhibitory factor OS=Mus musc... [more]
MIF_PIG3.257e-1434.78Macrophage migration inhibitory factor OS=Sus scro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-772 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417842 ID=CF417842; Name=CF417842; organism=Citrus sinensis; type=EST; length=578bp
GAAGTTTCCAGAAGATGCCTTGCTTGNACATTTCAACTAACGTCAAACTC
CATGGCGTTGACACGTCATCCATCCTCTCCGAGGCCACCTCCACTGTCGC
CAACATCATCGGCAAACCCGAGGCCTACGTGATGATTGTGTTGAAGGGAT
CGGTACCTATGTCGTTTGGTGGAACTGAGGATCCGGCAGCTTATGGTGAG
TTGGTGTCCATTGGTGGCCTTAACCCTGATGTGAACAAGAAGCTGAGTGC
TGCAATTTCTGCAATTCTTGAAAAGAAGCTGTCGGTACCCAAGTCACGAT
TCTTCATCAAGTTTTATGACACAAAGGGTTCAAACTTTGGATGGAATGGA
TCCACCTTCTAGATATTATTCTCAAAGCATGGCGCCATGAACTCTGACAA
TTGTCTTATCTATATGGTGATTACAATCTTTAGAACTATGTTAATAATTG
GCTGAATATTGTGTAATTTCTCCTATGATGTGTTTTCTTCTCGTTGGTGC
TAGCCAACAATATTGTGGNAATAGGAACTGTTTGGTTTATGGAGTAATAT
TGCATTTGTTATCTAAAAAAAAAAAAAA
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