CF417857

Overview
NameCF417857
Unique NameCF417857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVKSKIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVKSKIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVKSKIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVKSKIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVKSKIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDT+ NVKSKIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVK+KIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVK+KIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVK+KIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417857 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  412 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK-------LVVR*PSTLHLVLRLCGG 579
            TLEV+SSDTI+NVK+KIQDKEGIPPDQQRLIFAG  L+         ++  STLHLVLRL GG
Sbjct:   14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF417857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_YEAST4.386e-1469.84Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO4.386e-1469.84Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA4.386e-1469.84Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE4.386e-1469.84Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL4.386e-1469.84Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_ACECL7.482e-1468.25Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_WHEAT9.772e-1468.25Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN9.772e-1468.25Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU9.772e-1468.25Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC9.772e-1468.25Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-787 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417857 ID=CF417857; Name=CF417857; organism=Citrus sinensis; type=EST; length=669bp
TAAAAAAGCAAAGAGAAAAAGATATGCCCAAATCTTTACTTATGATTGAT
CGNTCTTGAAGCTCTCTTTTTTATCTTTTGATCTATCAAGAGATGTACAA
CTTTTATAGGTTTTCTATCAGTTTTTTCCTAGAGAGACCTGCCCGAAGGT
GTCTTTGAATTATGTAATGACTATATCTTCTACAATTCTGTGTTGTTGGT
TATGTTAATATTGTTTGTTTGGTTTGATTGTTTTGTATGGATATATTCTG
ATATGGTGTTTCTTTGGTCCAACAGATGAAAATCCTTGTGAAAACTCTCA
CCAGCAAGACGATTACTCTTGATGTGGAAAGCTCCAACACCGTTGATAAA
TGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGA
GGCTTATCACAACTTTGGAGGTCAAAAGCTCTGACACAATCAACAATGTC
AAGTCTAAGATCCAAGACAAGGAGGGCATCCCACCTGATCAACAGAGGTT
GATCTTTGCCGGCATAAACTTGAAGTTGGTCGTACGCTGACCATCCACTC
TGCATCTTGTGCTCCGTCTCTGTGGAGGTTTCTGAGTTTGGTCATCTGGG
TGTGTGTGTCTTATTTGCTTCNGNTTCTCATGGTTAATGCTTGCTTGCCA
TTGGTGATATGGCTTAAAT
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