CF417860

Overview
NameCF417860
Unique NameCF417860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.582e-87
Identity = 126/136 (92.65%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:   46 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RYG L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHI
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHI 136

HSP 2 Score: 85.5001 bits (210), Expect = 3.582e-87
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKAAAR 598
            + VGRQLVNIPSF+VRV+SQKH++FSLTSPFGGGRPGRVKRRN +A A+
Sbjct:  136 IRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAK 184
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 9.508e-85
Identity = 123/136 (90.44%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:   46 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            MVHV +YRNYGKTFK PRRPYEKERLD+EL+LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RYG L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHI
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHI 136

HSP 2 Score: 84.3445 bits (207), Expect = 9.508e-85
Identity = 38/49 (77.55%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKAAAR 598
            + VG+QLVNIPSF+VR+DSQKHI+F+LTSPFGGGRPGRVKRRN K+A++
Sbjct:  136 IRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASK 184
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.972e-65
Identity = 94/129 (72.87%), Postives = 111/129 (86.05%), Query Frame = 1 
Query:   67 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            R+Y KT K PRRP+E  RLD+EL+LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R G L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHI
Sbjct:    4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHI 132

HSP 2 Score: 80.4925 bits (197), Expect = 2.972e-65
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKAA 592
            + VG+Q+VN+PSFVVR+DSQKHI+F+LTSPFGGGRPGRV+R+  KAA
Sbjct:  132 IRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKKAKAA 178
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.221e-63
Identity = 90/127 (70.87%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:   73 YGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            + KT+  PRRPYEK RLD EL+++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R G L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 136

HSP 2 Score: 77.7962 bits (190), Expect = 1.221e-63
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIK 586
            + V +Q+VNIPSFVVR+DSQKHI+FSL SPFGGGRPGRVKR+N+K
Sbjct:  136 IRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLK 180
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 185.652 bits (470), Expect = 1.735e-62
Identity = 89/125 (71.20%), Postives = 108/125 (86.40%), Query Frame = 1 
Query:   79 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 135

HSP 2 Score: 75.0998 bits (183), Expect = 1.735e-62
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIK 586
            + V +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N K
Sbjct:  135 IRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAK 179
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.735e-62
Identity = 89/125 (71.20%), Postives = 108/125 (86.40%), Query Frame = 1 
Query:   79 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 135

HSP 2 Score: 75.0998 bits (183), Expect = 1.735e-62
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIK 586
            + V +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N K
Sbjct:  135 IRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAK 179
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.735e-62
Identity = 89/125 (71.20%), Postives = 108/125 (86.40%), Query Frame = 1 
Query:   79 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 135

HSP 2 Score: 75.0998 bits (183), Expect = 1.735e-62
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIK 586
            + V +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N K
Sbjct:  135 IRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAK 179
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.735e-62
Identity = 89/125 (71.20%), Postives = 108/125 (86.40%), Query Frame = 1 
Query:   79 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 135

HSP 2 Score: 75.0998 bits (183), Expect = 1.735e-62
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIK 586
            + V +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N K
Sbjct:  135 IRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAK 179
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.735e-62
Identity = 89/125 (71.20%), Postives = 108/125 (86.40%), Query Frame = 1 
Query:   79 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 135

HSP 2 Score: 75.0998 bits (183), Expect = 1.735e-62
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIK 586
            + V +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N K
Sbjct:  135 IRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAK 179
[Close]
BLAST of CF417860 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 3.215e-61
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 1 
Query:   67 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHI 453
            R   KT+K PRRP+E  RLDAEL+L GEYGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R G L+ES+ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHI
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHI 134

HSP 2 Score: 73.1738 bits (178), Expect = 3.215e-61
Identity = 29/46 (63.04%), Postives = 43/46 (93.48%), Query Frame = 2 
Query:  452 LXVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKA 589
            + VG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +++
Sbjct:  134 IRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRS 179
The following BLAST results are available for this feature:
BLAST of CF417860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS92_ARATH3.582e-8792.6540S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH9.508e-8590.4440S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN2.972e-6572.8740S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME1.221e-6370.8740S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT1.735e-6271.2040S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN1.735e-6271.2040S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE1.735e-6271.2040S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN1.735e-6271.2040S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN1.735e-6271.2040S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]
RS9B_SCHPO3.215e-6169.7740S ribosomal protein S9-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-790 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417860 ID=CF417860; Name=CF417860; organism=Citrus sinensis; type=EST; length=674bp
AAGATCGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGT
GCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGAC
GTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAG
TATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAG
CCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACC
CACGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTAC
GGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCAC
TGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTG
GCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCAC
ATTANGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGG
TTGATTCCCAGAAGCACATTGAATTCTCACTGACAAGTCCATTCGGAGGT
GGCCGCCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAGAAN
GCCGCCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAATTACCTGTG
TGAACAGATAGTTTTTTTATGGGT
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