CF417862

Overview
NameCF417862
Unique NameCF417862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.541e-33
Identity = 73/79 (92.41%), Postives = 74/79 (93.67%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.541e-33
Identity = 73/79 (92.41%), Postives = 74/79 (93.67%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            +FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            +FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            +FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 9.655e-33
Identity = 72/79 (91.14%), Postives = 73/79 (92.41%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            SF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 SFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.647e-32
Identity = 72/79 (91.14%), Postives = 73/79 (92.41%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            SF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 SFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            + +KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 TISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            SFTKL  RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 SFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
[Close]
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 3 
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            SFTKLFSRLFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDK+    R YF
Sbjct:    4 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYF 82
The following BLAST results are available for this feature:
BLAST of CF417862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ARF_VIGUN2.541e-3392.41ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA2.541e-3392.41ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_MAIZE5.660e-3391.14ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ORYSJ5.660e-3391.14ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ5.660e-3391.14ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF2_ARATH9.655e-3391.14ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ARATH1.647e-3291.14ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_SOLTU8.174e-3288.61ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF1_SALBA8.174e-3288.61ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO1.821e-3188.61ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-792 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417862 ID=CF417862; Name=CF417862; organism=Citrus sinensis; type=EST; length=680bp
TGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGA
ATTCTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAA
GCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTAATG
TAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCGGG
GGTCAAGACAAGGTATGTAGATTTTATTTTAATATATTCAGCCTGATCTA
GCTTTAGGATGTTTTTATGTTGATGATACTGTTGTTTCCTCTCATCGGTC
ACCAGTGAGTTAATGCATAGGGACAGGTCAGCTCTTTTAAATTATAAATT
CATTTTTTGGCCGTTAGCGTTGCTACCAGCGTATGTACATATGAATGTGT
CTTTTGCCTTGTAACAATGTGTCTCTTGAAGGTTGAGGGTGGTCGACCAT
AGAGTGAAGCATATTGTTTGCCTTTTGTGGTTTTCAAAAGTAAAGCCTTT
TTGTGCATTTGAAGTCTTAGCCTAGTTGTGCAAGGGAGCTGCCCATGGGC
TGGGGCAGGTTGCTGGGTTTCAATTATTAAGTCATGGCAAAGACAGGATT
GAAAGGTGTGATCCTGTTTCCTATATATTGNTCGAGCTTCTGACACATAT
AATTTTGGTCTCCCAGATCCGACCTTTGTG
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