CF417864

Overview
NameCF417864
Unique NameCF417864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.843e-43
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLT 321
            +HASLVGQAAPKHKGKISRSLAAKT LAIR DALGD QDN+MGLENRAKLEARLRNLEGK+L R +GS+KGKPK+EVY+KD+K G G +IT AKTYN AADS+ G T
Sbjct:  341 FHASLVGQAAPKHKGKISRSLAAKTVLAIRVDALGDSQDNTMGLENRAKLEARLRNLEGKDLGRLSGSSKGKPKIEVYNKDKKMGSGGLITPAKTYNTAADSLLGET 447          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.424e-41
Identity = 81/103 (78.64%), Postives = 93/103 (90.29%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSV 309
            +HAS+VGQAAPK+KGKISRSLAAK+ LAIRCDALGD QDN+MG+ENR KLEARLR LEGK+L R +GSAKGKPK+EVYDKD+KKG G +IT AKTYN AADS+
Sbjct:  340 FHASVVGQAAPKNKGKISRSLAAKSVLAIRCDALGDSQDNTMGVENRLKLEARLRTLEGKDLGRLSGSAKGKPKIEVYDKDKKKGSGGLITPAKTYNTAADSL 442          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_MACFA (Nucleolar protein 58 OS=Macaca fascicularis GN=NOP58 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.746e-23
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADS 306
            YHASLVGQ +PKHKGKISR LAAKT LAIR DA G+D  ++MG+ENRAKLEARLR LE + + + +G+ K   K E Y+           +  KTY+P+ DS
Sbjct:  342 YHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYEHK---------SEVKTYDPSGDS 434          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_HUMAN (Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.746e-23
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADS 306
            YHASLVGQ +PKHKGKISR LAAKT LAIR DA G+D  ++MG+ENRAKLEARLR LE + + + +G+ K   K E Y+           +  KTY+P+ DS
Sbjct:  342 YHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYEHK---------SEVKTYDPSGDS 434          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_MOUSE (Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.280e-23
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADS 306
            YHASLVGQ++PKHKGKISR LAAKT LAIR DA G+D  ++MG+ENRAKLEARLR LE + + + +G+ K   K E Y+           +  KTY+P+ DS
Sbjct:  342 YHASLVGQSSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGIENRAKLEARLRILEDRGIRKISGTGKALAKAEKYEHK---------SEVKTYDPSGDS 434          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_RAT (Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.633e-23
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADS 306
            YHASLVGQ +PKHKGKISR LAAKT LAIR DA G+D  ++MG ENRAKLEARLR LE + + + +G+ K   K E Y+           +  KTY+P+ DS
Sbjct:  342 YHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGAENRAKLEARLRILEDRGIRKISGTGKALAKAEKYEHK---------SEVKTYDPSGDS 434          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP5C_ARATH (Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.134e-21
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKK 252
            YHA LV QAAP++KGKI+RSLAAK+ALAIRCDA G+ QDN+MG+E+R KLEARLRNLEG +L         + + EV DKD KK
Sbjct:  312 YHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLKLEARLRNLEGGDLGAC------EEEEEVNDKDTKK 389          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_CANAL (Nucleolar protein 58 OS=Candida albicans GN=NOP58 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.439e-17
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADS 306
            YHASLVGQA+ K+KG+I+R+LAAK A+++R D   +++D S   GLENRAK+E RL  LEG+++   +   + +PK+E+ +  R     A  TAA    P ADS
Sbjct:  343 YHASLVGQASGKNKGRIARTLAAKAAVSLRYDCFDEERDESDDFGLENRAKVEGRLSQLEGRDMRTTSKVVREQPKVEITEA-RAYNADADSTAAAAAAPTADS 445          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_KLULA (Nucleolar protein 58 OS=Kluyveromyces lactis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLTENAADGNE 345
            YHASLVGQA+ K+KGKI+R LAAK A+++R DAL +D+D+S  +GLE+RAK+E+RL  LEG++L       +  PK+    ++ KK     IT A+ YN  AD+V      A   +E
Sbjct:  343 YHASLVGQASGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVESRLSQLEGRDL-------RTTPKVV---REHKK---TEITEARAYNADADTVSSAAAPADSDDE 446          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_YEAST (Nucleolar protein 58 OS=Saccharomyces cerevisiae GN=NOP58 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLTENAADGNE 345
            YHASLVGQA  K+KGKI+R LAAK A+++R DAL +D+D+S  +GLE+RAK+E RL  LEG++L       +   K+E             +T A+ YN  AD+    +++ +D ++
Sbjct:  343 YHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQLEGRDLRTTPKVVREAKKVE-------------MTEARAYNADADTAKAASDSESDSDD 446          
The following BLAST results are available for this feature:
BLAST of CF417864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NOP5B_ARATH9.843e-4379.44Probable nucleolar protein 5-2 OS=Arabidopsis thal... [more]
NOP5A_ARATH2.424e-4178.64Probable nucleolar protein 5-1 OS=Arabidopsis thal... [more]
NOP58_MACFA1.746e-2354.90Nucleolar protein 58 OS=Macaca fascicularis GN=NOP... [more]
NOP58_HUMAN1.746e-2354.90Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1... [more]
NOP58_MOUSE2.280e-2354.90Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1... [more]
NOP58_RAT6.633e-2354.90Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58... [more]
NOP5C_ARATH2.134e-2164.29Putative nucleolar protein 5-3 OS=Arabidopsis thal... [more]
NOP58_CANAL5.439e-1746.15Nucleolar protein 58 OS=Candida albicans GN=NOP58 ... [more]
NOP58_KLULA1.212e-1646.15Nucleolar protein 58 OS=Kluyveromyces lactis GN=NO... [more]
NOP58_YEAST1.582e-1641.88Nucleolar protein 58 OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-794 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417864 ID=CF417864; Name=CF417864; organism=Citrus sinensis; type=EST; length=349bp
TACCATGCGTCCCTTGTTGGTCAGGCAGCCCCAAAGCACAAGGGCAAAAT
TTCCCGGTCACTTGCGGCCAAAACTGCATTAGCAATTCGATGTGATGCTC
TTGGTGATGACCAAGATAACTCTATGGGACTGGAGAATCGTGCCAAGCTT
GAAGCACGGCTAAGGAATCTTGAAGGCAAAGAATTGAGTCGTGCTGCTGG
GTCTGCTAAAGGAAAGCCTAAGCTTGAAGTTTATGACAAGGACCGAAAGA
AGGGGCCTGGGGCAATGATAACTGCTGCCAAGACTTATAATCCTGCAGCA
GATTCCGTTTTTGGTCTAACGGAAAATGCTGCTGATGGAAATGAGGTAA
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