CF417866
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417866 vs. ExPASy Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 1.776e-35 Identity = 84/144 (58.33%), Postives = 101/144 (70.14%), Query Frame = 2 Query: 5 SLKLSSPKTRFLNGSTPLTRLSKPPSTPQNLPYSSFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPSESEQ 436 +LKLSSP F +GSTPL+ LSKP S P + + P I+AMK MQGRVVCA+SDKTVAVEVVRL PHP QAHDP+NQF+VGD+V+LEKSRPISKTKSF+A+ + R A K AG G+ LG+P ES+Q Sbjct: 12 ALKLSSP---FAHGSTPLSSLSKPNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAARKAEAG-----GDELLGLPLESQQ 147
BLAST of CF417866 vs. ExPASy Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 7.990e-28 Identity = 71/138 (51.45%), Postives = 85/138 (61.59%), Query Frame = 2 Query: 35 FLNGSTPLTRLSKPPSTPQNLPYSS---FPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPSESEQQ 439 F L R S P S+PQ + FP IKAMK M+G+VVCAS +KTVAVEV RL PHP QAHDPEN F+VGD+VQL K+RPISK K+F+AV P R + K AG S ELGIP +S+Q+ Sbjct: 4 FTGNGIGLNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK--AGSS-----GELGIPLQSQQE 134
BLAST of CF417866 vs. ExPASy Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.556e-22 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 2 Query: 47 STPLTRLSKPPSTPQNLPYSSFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 376 S+P +S PP + +I+A +++ GRVV +DKTV VEVVRL PHP QAHDP+NQF+VGD+V+L+ SRPISKTK F+A+ +PPR+ +K+ Sbjct: 5 SSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS 114
BLAST of CF417866 vs. ExPASy Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.246e-21 Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 116 QIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 376 +I+A K++ GRVV +DKTV VEVVRL PHP QAHDP+NQF+VGD+V+L +SRPISKTK F+AV +PPR+ +K+ Sbjct: 33 RIQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHFLAVPLPPRDTRRKS 119 The following BLAST results are available for this feature:
BLAST of CF417866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417866 ID=CF417866; Name=CF417866; organism=Citrus sinensis; type=EST; length=551bpback to top |