CF417867

Overview
NameCF417867
Unique NameCF417867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 5.089e-88
Identity = 152/166 (91.57%), Postives = 158/166 (95.18%), Query Frame = 3
Query:    6 NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 503
            NLERYKESELIHCRWAMLAVPGI+VPEALGLGNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+SKDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGDVIIP+GI P
Sbjct:   80 NLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPKGIFP 245          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 4.032e-85
Identity = 143/165 (86.67%), Postives = 154/165 (93.33%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 497
            EN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA+P GQATYLGNPVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IPR I
Sbjct:   78 ENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 242          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.152e-31
Identity = 76/157 (48.41%), Postives = 104/157 (66.24%), Query Frame = 3
Query:    9 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 476
            ++R++E ELIH RWAMLA  G L  E L    W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K  + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct:  133 IQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.719e-31
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 3
Query:    9 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 476
            L+R++E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K  + ++ EIK+ RLA++ F+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct:  130 LQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 282          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 67/144 (46.53%), Postives = 97/144 (67.36%), Query Frame = 3
Query:    9 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 440
            ++R++E ELIH RWAML   G +  EAL    W  A +   V G  ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K +  K+ EIK+ RLA++AF+ F + Q+A+ G GP+  LAT
Sbjct:  134 IQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPVSFLAT 273          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 76/168 (45.24%), Postives = 93/168 (55.36%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R   + P    E   YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   89 ETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.247e-26
Identity = 72/168 (42.86%), Postives = 94/168 (55.95%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEALGL--GNWVQAQEW-----AAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 482
            EN  +Y+  ELIH RWAML   G ++PEAL     N      W       + G    Y G  +P   L   +V E + +   E+ R     D E K +PGG FDPLG +KDP++    KVKEIKNGRLA+ A +GF + Q+   G GP+ENLA HL+DP+ NN+  VI
Sbjct:  105 ENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-LVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLSDPFGNNLLTVI 270          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.234e-25
Identity = 75/170 (44.12%), Postives = 94/170 (55.29%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            EN  + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:   98 ENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 262          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.612e-25
Identity = 73/167 (43.71%), Postives = 92/167 (55.09%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  +   ++  I   + + + FVE  R       +   K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL+ H+ADP  NN
Sbjct:   61 ETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLSDHIADPVANN 225          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.105e-25
Identity = 75/170 (44.12%), Postives = 94/170 (55.29%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R   +      DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QALVTGKGPLENLADHLADPVNNN 254          
The following BLAST results are available for this feature:
BLAST of CF417867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB11_SOLLC5.089e-8891.57Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU4.032e-8586.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4A_ARATH1.152e-3148.41Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH5.719e-3147.77Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH2.034e-2846.53Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB21_SINAL6.543e-2745.24Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB26_ARATH3.247e-2642.86Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2B_PINSY1.234e-2544.12Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_SOLLC1.612e-2543.71Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB25_NICPL2.105e-2544.12Chlorophyll a-b binding protein E, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-797 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417867 ID=CF417867; Name=CF417867; organism=Citrus sinensis; type=EST; length=618bp
CTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGG
GCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGG
CAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCA
CATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTG
ATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAA
AGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCT
TCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAA
AATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTGCGTGCAACAATC
AGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTG
ATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATTGTG
CCTTGAAGAACTGCATTGTTANATTATCCAGTCCACTGTAAAATTCCCTG
TTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAAGAT
TAGAAAGTAATTGTCCTC
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