CF417870

Overview
NameCF417870
Unique NameCF417870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.126e-78
Identity = 158/237 (66.67%), Postives = 172/237 (72.57%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAPLIDAEELTQWS YRA IAEFIATLLFLYITV TVIGYK QTDA+  G +   C   G  LG+ W          +    +   H      + +  A +          +A CLGAICG GLVK FQ +YY  YGGGANEL+DGYS GTGL AEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIP+TGTGI PARSLGAAVIY+K+KAWDDQWI
Sbjct:   20 YTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAA-CGGVGI-LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWI 254
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.070e-77
Identity = 156/237 (65.82%), Postives = 171/237 (72.15%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAPLIDA+ELT+WS YRA IAEFIATLLFLYITV TVIGYK QTDA   G +   C   G  LG+ W          +    +   H      + +  A +          +A CLGAICG GLVK FQ +YY  YGGGANEL+DGYS GTGL AEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIP+TGTGI PARSLGAAVIY+K+KAWDDQWI
Sbjct:   21 YTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAA-CGGVGI-LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWI 255
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.932e-77
Identity = 152/237 (64.14%), Postives = 168/237 (70.89%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAP  D EEL +W  YRA IAEF+ATLLFLY+++LTVIGYK+QTDA  GG +   C   G  LG+ W          +    +   H        +  A +          +A CLGAICGCG VKAFQ SYY  YGGGANELADGY+ GTGLGAEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIP+TGTGI PARS GAAVIY+ EKAWDDQWI
Sbjct:   18 YKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVD---CGGVGI-LGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWI 250
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.394e-76
Identity = 154/237 (64.98%), Postives = 169/237 (71.31%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAPLID EELT+WS YRA IAEFIATLLFLYITV TVIGYK Q+DA     +   C   G  LG+ W          +    +   H      + +  A +          +A CLGAICG GLVK FQ SYY  YGGGANEL+DGYS GTGLGAEIIGTFVLVYTVFSATDPKR A DSH+PVLAPLPIGFAVFMVHLATIP+TGTGI PARSLG AVIY+K+KAWDDQWI
Sbjct:   20 YTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAA-CSGVGI-LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWI 254
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.200e-75
Identity = 152/237 (64.14%), Postives = 166/237 (70.04%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAP ID  EL +WSFYRA IAEF+ATLLFLYITVLTVIGYK Q+D + GG +   C   G  LG+ W          +    +   H      + +  A +          +A CLGAICG G VKAFQ SYY  YGGGAN LADGYSTGTGL AEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIP+TGTGI PARS GAAVIY+K K WDD WI
Sbjct:   18 YQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVD---CGGVGI-LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWI 250
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.753e-75
Identity = 150/237 (63.29%), Postives = 165/237 (69.62%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPP P  DA+ELT+WS YRA IAEF+ATLLFLYITVLTVIGYK Q+D   GG +   C   G  LG+ W          +    +   H      + +  A +          +A CLGAICG G VKAFQ SYY  YGGGAN LADGY+TGTGL AEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIP+TGTGI PARS GAAVIY+K K WDD WI
Sbjct:   16 YEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVD---CGGVGI-LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWI 248
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 8.360e-75
Identity = 154/237 (64.98%), Postives = 167/237 (70.46%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAPLIDA EL  WS YRA IAEFIATLLFLYITV TVIGYK QTDA+  G +   C   G  LG+ W          +    +   H      + +  A +          +A CLGAICG GLVKAFQ +Y+  YGGGAN LA GYS GTGLGAEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIPVTGTGI PARSLGAAVIY+K+K WDD WI
Sbjct:   21 YTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAA-CGGVGV-LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWI 255
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.092e-74
Identity = 151/237 (63.71%), Postives = 167/237 (70.46%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXT---H*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAPL+DAEELT+WS YRA IAEF+ATLLFLYITV TVIGYK QTDA   G +   C   G  LG+ W          +        H      + +  A +          +A CLGAICG GLVK FQ ++Y  YGGGANEL+ GYS GTGL AEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIP+TGTGI PARSLGAAVIY+ +KAWDD WI
Sbjct:   16 YSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAA-CGGVGV-LGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWI 250
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.419e-74
Identity = 148/237 (62.45%), Postives = 165/237 (69.62%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPP P  DAEELT+WS YRA IAEF+ATLLFLY+TVLTVIGYK Q+D   GG +   C   G  LG+ W          +    +   H      + +  A +          +A CLGAICG G VKAFQ S+Y  YGGGAN LADGY+TGTGL AEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIP+TGTGI PARS GAAVI++K K WDD WI
Sbjct:   16 YEDPPPTPFFDAEELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVD---CGGVGI-LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWI 248
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.243e-74
Identity = 148/237 (62.45%), Postives = 166/237 (70.04%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAPL+D +EL +WS YRA IAEF+ATLLFLY+TV TVIGYK QTDA+  GD+   C   G  LG+ W          +    +   H      + +  A +          +A CLGA+CG  LVK FQ S+Y  YGGGANELA GYS GTGL AEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIPVTGTGI PARSLGAAV+Y+  KAW DQWI
Sbjct:   15 YEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAA-CGGVGV-LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWI 249
The following BLAST results are available for this feature:
BLAST of CF417870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
PIP24_MAIZE2.126e-7866.67Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE3.070e-7765.82Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP24_ARATH8.932e-7764.14Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP22_ORYSJ3.394e-7664.98Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP21_ARATH2.200e-7564.14Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP22_ARATH3.753e-7563.29Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_MAIZE8.360e-7564.98Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_MAIZE1.092e-7463.71Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP23_ARATH5.419e-7462.45Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP25_ORYSJ9.243e-7462.45Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-800 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417870 ID=CF417870; Name=CF417870; organism=Citrus sinensis; type=EST; length=705bp
ATTACCACGACCCTCCTCCAGCTCCATTGATCGATGCCGAGGAGCTCACC
CAATGGTCATTTTACAGGGCTACTATAGCTGAGTTCATCGCCACGCTCTT
GTTTTTGTACATTACTGTGCTGACAGTGATTGGTTACAAGAGCCAGACTG
ACGCCAACCACGGCGGTGATGAGATGTGGTGGTGTTGGCATTCTGGGCAT
CGCTTGGGCCTTTGGTGGCATGATCTTTGTTCTTGTTTACTGCNCTGCTG
GTATCTCTGGNGGACACATTAACCCGNCGGNGACATTTGGGCTGTTCTTG
GCGCGGCAAGGTGTCACTGGTGCGAGCCGTAATGTACATGGCTGGCTCAN
TGTTTGGGAGCCATATGTGGCTGCGGGCTCGTTAAGGCTTTCCAGAAGTC
TTACTACNCNANATACGGCGGNGGAGCCAATGAGCTCGCTGATGGGTACA
GCACTGGCACTGGATTGGGTGCTGAGATCATCGGTACCTTTGTTCTTGTC
TACACTGTTTTCTCCGCCACTGATCCCAAGAGANATGCTANGGACTCCCA
CGTTCCCGTCTTGGCGCCATTGCCNATTGGATTTGCTGTGTTCATGGTTC
ACTTGGCTACGATCCCTGTCACTGGAACTGGCATCNACCCCGCTAGAAGT
TTGGGAGCTGCAGTGATTTACAGCAAGGAGAAGGCTTGGGATGATCAATG
GATCT
back to top