CF417874
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 4.793e-71 Identity = 137/168 (81.55%), Postives = 143/168 (85.12%), Query Frame = 1 Query: 1 FAPANFSTTKSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 F PA S KSSAPWKQS +SFS + LK I+AMAE + T EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR Sbjct: 10 FTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 175
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 2.014e-69 Identity = 134/170 (78.82%), Postives = 140/170 (82.35%), Query Frame = 1 Query: 1 FAPANFSTTKSSAPWKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 F P ++APWKQS SFS + LK T I+AMAE T K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR Sbjct: 10 FTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 179
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 2.908e-68 Identity = 134/173 (77.46%), Postives = 142/173 (82.08%), Query Frame = 1 Query: 1 FAPANFSTTKS---SAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 F P+ ST KS S PWKQSS+ S +P A + + K AE +T EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR Sbjct: 10 FTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 178
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2) HSP 1 Score: 255.373 bits (651), Expect = 1.885e-67 Identity = 134/177 (75.71%), Postives = 148/177 (83.62%), Query Frame = 1 Query: 1 FAPANFST-----TKSSAPWKQSSS--FSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 F+P++ S+ T+ + +KQ S+ F+ +P +H++ R A AEGK T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVNPGR Sbjct: 10 FSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGR 183
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 3.930e-65 Identity = 127/168 (75.60%), Postives = 134/168 (79.76%), Query Frame = 1 Query: 1 FAPANFSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 F+PA +TT S+ S S RP + +T E + P KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR Sbjct: 9 FSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGR 175
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 4.346e-64 Identity = 126/162 (77.78%), Postives = 134/162 (82.72%), Query Frame = 1 Query: 16 FSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 FSTT +S SF+ ++ A +T++ A A TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR Sbjct: 27 FSTTHRP----KSLSFTKTAIR--AEKTDSSAAAAAAPA---TKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGR 179
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.308e-60 Identity = 109/121 (90.08%), Postives = 113/121 (93.39%), Query Frame = 1 Query: 139 PTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR Sbjct: 56 PAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGR 176
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.735e-49 Identity = 101/160 (63.12%), Postives = 120/160 (75.00%), Query Frame = 1 Query: 25 TKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 T++ A + SS +V + A R ++A AE K A +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK +KEQCLAL T+LR+K+K+ FYRVFP+G+VQYLHP DGVYPEKVN GR Sbjct: 7 TQAPAATRASSRVAVAA-RPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGR 165
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 6.524e-44 Identity = 95/172 (55.23%), Postives = 116/172 (67.44%), Query Frame = 1 Query: 19 STTKSSAPWKQSSSF------SVRPLKHNAPRTNTIKAMAEGKTETPTKE----APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 S T SSA Q +F + + AP ++A E E AP F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR Sbjct: 16 SATLSSAVCAQKKAFFGAQVAAKKTTFEAAPARFIVRAEEEEAAPAEKVEKKAAAPKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGR 187
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.488e-43 Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 169 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 P ++ N PSP FGGSTGG LR A+VEE Y ITW E FEMPTGG A MR+G NLL LA+KEQCLALGT+L+ K+KI Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR Sbjct: 2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGR 113 HSP 2 Score: 34.6538 bits (78), Expect = 1.488e-43 Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 2 Query: 527 SIGKNVSPIEVKFTGKQVYD 586 SIGKNV+PI VKFT K YD Sbjct: 122 SIGKNVNPINVKFTNKATYD 141 The following BLAST results are available for this feature:
BLAST of CF417874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417874 ID=CF417874; Name=CF417874; organism=Citrus sinensis; type=EST; length=646bpback to top |