CF417874

Overview
NameCF417874
Unique NameCF417874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.793e-71
Identity = 137/168 (81.55%), Postives = 143/168 (85.12%), Query Frame = 1
Query:    1 FAPANFSTTKSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            F PA  S  KSSAPWKQS +SFS + LK        I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct:   10 FTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 175          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.014e-69
Identity = 134/170 (78.82%), Postives = 140/170 (82.35%), Query Frame = 1
Query:    1 FAPANFSTTKSSAPWKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            F P       ++APWKQS  SFS  + LK     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct:   10 FTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 179          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.908e-68
Identity = 134/173 (77.46%), Postives = 142/173 (82.08%), Query Frame = 1
Query:    1 FAPANFSTTKS---SAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            F P+  ST KS   S PWKQSS+ S    +P    A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct:   10 FTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 178          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.885e-67
Identity = 134/177 (75.71%), Postives = 148/177 (83.62%), Query Frame = 1
Query:    1 FAPANFST-----TKSSAPWKQSSS--FSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            F+P++ S+     T+ +  +KQ S+  F+ +P  +H++ R     A AEGK    T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVNPGR
Sbjct:   10 FSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGR 183          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.930e-65
Identity = 127/168 (75.60%), Postives = 134/168 (79.76%), Query Frame = 1
Query:    1 FAPANFSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            F+PA  +TT S+       S S RP   +  +T       E  +  P  KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR
Sbjct:    9 FSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGR 175          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.346e-64
Identity = 126/162 (77.78%), Postives = 134/162 (82.72%), Query Frame = 1
Query:   16 FSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            FSTT       +S SF+   ++  A +T++  A A       TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR
Sbjct:   27 FSTTHRP----KSLSFTKTAIR--AEKTDSSAAAAAAPA---TKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGR 179          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.308e-60
Identity = 109/121 (90.08%), Postives = 113/121 (93.39%), Query Frame = 1
Query:  139 PTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct:   56 PAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGR 176          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.735e-49
Identity = 101/160 (63.12%), Postives = 120/160 (75.00%), Query Frame = 1
Query:   25 TKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            T++ A  + SS  +V   +  A R   ++A AE       K A    +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK  +KEQCLAL T+LR+K+K+   FYRVFP+G+VQYLHP DGVYPEKVN GR
Sbjct:    7 TQAPAATRASSRVAVAA-RPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGR 165          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.524e-44
Identity = 95/172 (55.23%), Postives = 116/172 (67.44%), Query Frame = 1
Query:   19 STTKSSAPWKQSSSF------SVRPLKHNAPRTNTIKAMAEGKTETPTKE----APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            S T SSA   Q  +F      + +     AP    ++A  E        E    AP  F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI  Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR
Sbjct:   16 SATLSSAVCAQKKAFFGAQVAAKKTTFEAAPARFIVRAEEEEAAPAEKVEKKAAAPKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGR 187          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.488e-43
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  169 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR+G NLL LA+KEQCLALGT+L+ K+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGR 113          

HSP 2 Score: 34.6538 bits (78), Expect = 1.488e-43
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  527 SIGKNVSPIEVKFTGKQVYD 586
            SIGKNV+PI VKFT K  YD
Sbjct:  122 SIGKNVNPINVKFTNKATYD 141          
The following BLAST results are available for this feature:
BLAST of CF417874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_NICSY4.793e-7181.55Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC2.014e-6978.82Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA2.908e-6877.46Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL1.885e-6775.71Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH3.930e-6575.60Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH4.346e-6477.78Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_HORVU1.308e-6090.08Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE6.735e-4963.13Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA6.524e-4455.23Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_PORPU1.488e-4369.64Photosystem I reaction center subunit II OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-804 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417874 ID=CF417874; Name=CF417874; organism=Citrus sinensis; type=EST; length=646bp
TTCGCACCGGCCAACTTCTCCACCACCAAATCCTCTGCGCCGTGGAAGCA
ATCATCATCATTTTCAGTAAGGCCACTAAAACATAATGCCCCACGTACCA
ACACCATCAAGGCCATGGCTGAGGGAAAAACAGAGACACCCACAAAAGAG
GCTCCGGTGGGCTTCACCCCACCAGAACTGGACCCCAACACCCCATCTCC
GATCTTCGGAGGCAGCACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAG
AGTTTTATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTTGAAATG
CCCACTGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCTGAAGCT
GGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGT
ACAAGATTAAGTACCAGTTTTACCGAGTGTTTCCCAATGGAGAGGTTCAG
TATTTGCATCCCAAGGATGGTGTTTATCCTGAGAAAGTGAACCCCGGAAG
GGGAAGGAGTTGGGCAGAATTACAGGTCTATTGGTAAGAATGTGAGTCCT
ATTGAGGTCAAGTTTACAGGGAAGCAAGTGTATGATCTGTAAATTTAAAT
TGTAAGCTGCTAAGCTGACGGGCCTCGGATGATCTGTTGATTAATT
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