CF417883

Overview
NameCF417883
Unique NameCF417883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_XENLA (Methylthioribose-1-phosphate isomerase OS=Xenopus laevis GN=mri1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.651e-45
Identity = 94/157 (59.87%), Postives = 115/157 (73.25%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 472
            H+ G L   +C+ETRP+NQGSRLTA+ELV+++IP            M++ +V+AV+VGADRV ANGDTANKIGTY LA+ AK+H I FYVAAP TS DL+L +G  IVIEER + EL       G ++AA GI VWNPAFDVTP  LITGIITE+GV
Sbjct:  187 HALGRLSHVFCTETRPYNQGSRLTAYELVYEKIPATLITDSMASVTMRERKVTAVVVGADRVVANGDTANKIGTYQLAIIAKYHGIPFYVAAPSTSCDLSLPTGGSIVIEERPSHELTDIN---GIRIAAPGIDVWNPAFDVTPHELITGIITERGV 340          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_XENTR (Methylthioribose-1-phosphate isomerase OS=Xenopus tropicalis GN=mri1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.275e-45
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 472
            H  G L   +C+ETRP+NQGSRLTA+ELV+++IP            ++D +V+AV+VGADRV ANGDTANKIGTY LA+ A++H I FYVAAP TS DL+L +G  IVIEER + EL       G ++AA GI VWNPAFDVTP  LITGIITE+GV
Sbjct:  187 HVLGRLSHVFCTETRPYNQGSRLTAYELVYEKIPATLITDSMASAAIRDRKVTAVVVGADRVVANGDTANKIGTYQLAITARYHGIPFYVAAPSTSCDLSLPTGGSIVIEERPSHELTDIN---GVRIAAPGIGVWNPAFDVTPHELITGIITERGV 340          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_HUMAN (Methylthioribose-1-phosphate isomerase OS=Homo sapiens GN=MRI1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 472
            HS G LE A+C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDTANK+GTY LA+ AK H I FYVAAP +S DL L +G+EI+IEER  +EL       G ++AA GI VWNPAFDVTP +LIT GIITE GV
Sbjct:  189 HSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVN---GVRIAAPGIGVWNPAFDVTPHDLITGGIITELGV 343          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_BOVIN (Methylthioribose-1-phosphate isomerase OS=Bos taurus GN=MRI1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.062e-44
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 472
            H+ G LE A+C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDTANK+GTY LA+ AK H I FYVAAP +S DL L +G+EIVIEER  +EL       G ++AA GI VWNPAFDVTP +LIT GIITE GV
Sbjct:  189 HNLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLIADSMAAAAMAHQGVSAVVVGADRVVANGDTANKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLETGREIVIEERPDQELTDVN---GVRIAAPGIGVWNPAFDVTPHDLITGGIITELGV 343          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_RAT (Methylthioribose-1-phosphate isomerase OS=Rattus norvegicus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.546e-43
Identity = 96/158 (60.76%), Postives = 112/158 (70.89%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 472
            H  G LE  +C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDTANKIGTY LA+ AK H I FYVAAP +S DL L +G+EIVIEER ++EL       G ++AA GI VWNPAFDVTP  LIT GIITE GV
Sbjct:  189 HEMGRLEHTFCTETRPYNQGARLTAFELVYEKIPATLITDSMAAAAMVHQGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIVIEERPSQELTDLN---GVRIAAQGIRVWNPAFDVTPHELITGGIITELGV 343          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_MOUSE (Methylthioribose-1-phosphate isomerase OS=Mus musculus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.637e-43
Identity = 95/158 (60.13%), Postives = 112/158 (70.89%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 472
            H  G LE  +C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDTANKIGTY LA+ AK H + FYVAAP +S DL L +G+EIVIEER ++EL       G ++AA GI VWNPAFDVTP  LIT GIITE GV
Sbjct:  189 HEMGRLEHTFCTETRPYNQGARLTAFELVYEQIPATLITDSMAAAAMAHRGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGVPFYVAAPSSSCDLHLETGKEIVIEERPSQELTDLN---GVRIAAQGIRVWNPAFDVTPHELITGGIITELGV 343          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_DESHY (Methylthioribose-1-phosphate isomerase OS=Desulfitobacterium hafniense (strain Y51) GN=mtnA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.308e-42
Identity = 93/150 (62.00%), Postives = 108/150 (72.00%), Query Frame = 2
Query:   29 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 478
            Y  ETRPF QG+RLTA EL++D IP           LM+ G +  VIVGADR+AANGDTANKIGTYSLA+ A  H I FYVAAP ++IDL + SGQ+I IEER+ KEL   R   G QVA   + V+NPAFDVTPA LITGIITEKG+VT
Sbjct:  185 YAGETRPFLQGARLTALELMNDHIPVTLIADNMAGFLMQQGNIDLVIVGADRIAANGDTANKIGTYSLAVLAHAHGIPFYVAAPTSTIDLKVPSGQDIPIEERNPKEL---REVFGVQVAPPEVPVYNPAFDVTPAKLITGIITEKGIVT 331          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_DESHD (Methylthioribose-1-phosphate isomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=mtnA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.308e-42
Identity = 93/150 (62.00%), Postives = 108/150 (72.00%), Query Frame = 2
Query:   29 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 478
            Y  ETRPF QG+RLTA EL++D IP           LM+ G +  VIVGADR+AANGDTANKIGTYSLA+ A  H I FYVAAP ++IDL + SGQ+I IEER+ KEL   R   G QVA   + V+NPAFDVTPA LITGIITEKG+VT
Sbjct:  185 YAGETRPFLQGARLTALELMNDHIPVTLIADNMAGFLMQQGNIDLVIVGADRIAANGDTANKIGTYSLAVLAHAHGIPFYVAAPTSTIDLKVPSGQDIPIEERNPKEL---REVFGVQVAPPEVPVYNPAFDVTPAKLITGIITEKGIVT 331          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_SCHPO (Methylthioribose-1-phosphate isomerase OS=Schizosaccharomyces pombe GN=mri1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.037e-39
Identity = 90/175 (51.43%), Postives = 111/175 (63.43%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGL---------------GEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 481
            H  G LE AYC+ETRP+NQGSRLTAFELVHD+IP           +M   ++ A++VGADRV  NGDTANKIGTY+LA+ AK     F VAAP +SID +L+SG +I IE+R   E+    G +                  +AA GI V++PAFDVTPANLIT I TEKG  T+
Sbjct:  178 HESGNLEHAYCTETRPYNQGSRLTAFELVHDKIPATLVTDSTVASIMH--KIDAIVVGADRVTRNGDTANKIGTYNLAILAKHFGKPFIVAAPFSSIDTSLASGSQITIEQRPPIEMTTITGPIITDSNSRNLEDPKRVRISIAAPGIDVYSPAFDVTPANLITAIATEKGFYTQ 350          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_PELTS (Methylthioribose-1-phosphate isomerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mtnA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.354e-39
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 475
            H  G     Y  ETRP  QG+RLTA+E++ + IP           L+  G+   V+VGADR+AANGD ANKIGTYSLA+ A+ H I FYVAAP+++IDL+L+SG+EI IEER + E+       G  VA  G++VWNPAFDVTPA LIT IIT++G+V
Sbjct:  178 HEAGRRVSVYAGETRPLLQGARLTAWEMLQEGIPVTLITDSMAGYLLAKGKADLVVVGADRIAANGDVANKIGTYSLAVLAREHKIPFYVAAPVSTIDLSLASGEEIPIEERDSSEVTHL---AGRPVAPEGVNVWNPAFDVTPARLITAIITDRGIV 332          
The following BLAST results are available for this feature:
BLAST of CF417883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_XENLA1.651e-4559.87Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_XENTR6.275e-4559.24Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_HUMAN4.068e-4460.76Methylthioribose-1-phosphate isomerase OS=Homo sap... [more]
MTNA_BOVIN9.062e-4460.76Methylthioribose-1-phosphate isomerase OS=Bos taur... [more]
MTNA_RAT1.546e-4360.76Methylthioribose-1-phosphate isomerase OS=Rattus n... [more]
MTNA_MOUSE2.637e-4360.13Methylthioribose-1-phosphate isomerase OS=Mus musc... [more]
MTNA_DESHY1.308e-4262.00Methylthioribose-1-phosphate isomerase OS=Desulfit... [more]
MTNA_DESHD1.308e-4262.00Methylthioribose-1-phosphate isomerase OS=Desulfit... [more]
MTNA_SCHPO1.037e-3951.43Methylthioribose-1-phosphate isomerase OS=Schizosa... [more]
MTNA_PELTS1.354e-3953.16Methylthioribose-1-phosphate isomerase OS=Pelotoma... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-813 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417883 ID=CF417883; Name=CF417883; organism=Citrus sinensis; type=EST; length=672bp
TCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACACGTCCAT
TCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGATCGCATA
CCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGAAAGATGG
TCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTGGCTGCAAATGGTG
ACACTGCTAACAAGATTGGAACCTACAGCCTTGCATTATGTGCAAAGTTT
CATAATATTCTGTTTTATGTGGCTGCTCCACTGACGTCAATTGATTTAAC
CCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGGTCTGCTAAAGAAT
TGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGCTGCATCTGGAATC
TCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTAATTTGATCACTGG
AATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGTGCTGATGATGCTT
TTGACATAAAGGATTTCATACAAAAGACAGCCTGAGGCTCTGATGCAAAA
GAAGGTGATTTTTAACCGGATGAAGTGTACCCTTGTAAATTTAAACAAGA
AATGAAGTTCTCCAGCCTGGGCGAAGATCTGTGGGAAGGAACATTGTATC
TCGCTGCTTTAAAGTCCCTTTT
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