CF417887

Overview
NameCF417887
Unique NameCF417887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.686e-58
Identity = 106/130 (81.54%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390
            MQRVMQNNAAVFRTQETLEEGC+LI KAWES+HDVK++DRSLIWN+D             ACITMHSAEARKESRGAHAREDFTKRDDE WMKH+LGYWENEKVRL YRPVHMNTLD E+ESFPPKARVY
Sbjct:  501 MQRVMQNNAAVFRTQETLEEGCKLITKAWESYHDVKISDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEQWMKHSLGYWENEKVRLAYRPVHMNTLDSEVESFPPKARVY 630          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.023e-55
Identity = 102/130 (78.46%), Postives = 112/130 (86.15%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390
            MQR+MQNNAAVFRTQETLEEGCQLIDKAWESF DV++ DRS+IWN+D             A ITMHSAEARKESRGAHAREDFTKR+D  WMKHTLGYWE+EKVRLDYRPVHM+TLDDEI++FPPKARVY
Sbjct:  505 MQRIMQNNAAVFRTQETLEEGCQLIDKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDFTKREDGEWMKHTLGYWEDEKVRLDYRPVHMDTLDDEIDTFPPKARVY 634          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.628e-55
Identity = 99/130 (76.15%), Postives = 108/130 (83.08%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390
            MQRVMQNNAAVFRTQETLEEGC LIDK W+SF DVK+TDRS+IWN+D             ACITMHSAEARKESRGAHAREDFTKRDD NWMKHTLGYWE   V+L+YRPVHM TLDDE+++FPPK RVY
Sbjct:  503 MQRVMQNNAAVFRTQETLEEGCDLIDKTWDSFGDVKVTDRSMIWNSDLIETMELENLLVNACITMHSAEARKESRGAHAREDFTKRDDANWMKHTLGYWEEGNVKLEYRPVHMKTLDDEVDTFPPKPRVY 632          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32
Identity = 75/134 (55.97%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESF-HDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE--NEKVRLDYRPVHMNTLD-DEIESFPPKARVY 390
            MQ++MQ NAAVFR  + L+EG +LIDK   S  +D+K TDR++IWNTD             A +TMHSAEARKESRGAHARED+ +RDD NWMKHTL Y +    KV L+YRPV   TLD  E+E+  P  RVY
Sbjct:  493 MQKIMQRNAAVFRDGQVLKEGVELIDKCARSLINDLKTTDRTMIWNTDLIESLELQNLMTQAVLTMHSAEARKESRGAHAREDYKERDDANWMKHTLSYLDVNTGKVTLNYRPVVSETLDQSEMETIKPFKRVY 626          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32
Identity = 67/131 (51.15%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390
            MQR MQ++A+VFRTQE L+EG ++I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+D+ WM+HTL G  E  KV LDY+PV + TL DE+++ PP  RVY
Sbjct:  466 MQRTMQSHASVFRTQEVLDEGAEMISEIRSGYKDIKVNDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDKEWMQHTLSGVDEAGKVVLDYKPVTLTTLSDEVKAIPPAKRVY 596          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.756e-31
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390
            MQR MQ++A+VFRTQE L+EG  +I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+DE+WMKHTL    E  KV LDY+PV + TL DE+ + PP  RVY
Sbjct:  466 MQRTMQSHASVFRTQEVLDEGAGMISEIRSGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDEDWMKHTLSSIDEAGKVVLDYKPVTLTTLTDEVTAVPPVKRVY 596          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 66/131 (50.38%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390
            MQR MQ++A+VFRTQE L+EG  +I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+D +WMKHTL    E  K+ +DY+PV + TL DEI + PP  RVY
Sbjct:  466 MQRTMQSHASVFRTQEVLDEGAGMISEIRNGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDGDWMKHTLSSIDEAGKIVIDYKPVTLTTLTDEISAIPPAKRVY 596          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICTY (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi GN=sdhA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.259e-29
Identity = 62/131 (47.33%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 390
            MQR MQ++ +VFRTQE L+EG ++I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+D +W+KHTL   ++  ++ LDY+PV + TL DEI + PP  R+Y
Sbjct:  466 MQRTMQSHVSVFRTQELLDEGARMISEIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDIDWIKHTLSSIDDSGQIILDYKPVTLTTLTDEISTIPPVKRIY 596          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.818e-28
Identity = 63/131 (48.09%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 390
            MQR MQ++ +VFRTQ+ L+EG  +I +    + D+K+ D+SLIWN+D             A +T+ SA ARKESRGAHARED+  R+D +W+KHTL   ++  KV LDY+PV + TL D I + PP  RVY
Sbjct:  466 MQRTMQSHVSVFRTQKLLDEGVGMISEIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVCSAAARKESRGAHAREDYPDRNDRDWIKHTLSSIDDSGKVVLDYKPVTLTTLTDAISAIPPVKRVY 596          
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_PARDE (Succinate dehydrogenase flavoprotein subunit OS=Paracoccus denitrificans GN=sdhA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.428e-27
Identity = 67/136 (49.26%), Postives = 83/136 (61.03%), Query Frame = 1
Query:    1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMN--TLDDE----IESFPPKARVY 390
            MQR MQ +AAVFRT +TL EG   +        D+K+TDRSLIWN+D             A  T+ +AEARKESRGAHA ED+ +RDD NW KH+L + E   V+L YRPVH+   T  DE    ++   PKARVY
Sbjct:  465 MQRTMQADAAVFRTDKTLAEGVDKMRVIAGKLSDLKVTDRSLIWNSDLMETLELTNLMPNALATIVAAEARKESRGAHAHEDYPERDDANWRKHSLAWIEGNDVKLAYRPVHLEPLTRQDEGGIDLKKIAPKARVY 600          
The following BLAST results are available for this feature:
BLAST of CF417887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHSA_ORYSJ1.686e-5881.54Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA1_ARATH1.023e-5578.46Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA2_ARATH6.628e-5576.15Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DICDI1.589e-3255.97Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RICBR4.622e-3251.15Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICCN1.756e-3151.91Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICFE8.717e-3150.38Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICTY1.259e-2947.33Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICPR1.818e-2848.09Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_PARDE3.428e-2749.26Succinate dehydrogenase flavoprotein subunit OS=Pa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-817 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417887 ID=CF417887; Name=CF417887; organism=Citrus sinensis; type=EST; length=666bp
ATGCAACGCGTGATGCAAAATAATGCCGCTGTCTTCCGAACACAGGAAAC
ATTGGAGGAAGGTTGTCAATTAATTGACAAGGCATGGGAGAGTTTCCATG
ATGTTAAGTTGACAGATCGTAGTTTGATATGGAACACTGACTTGATAGAA
ACTATAGAGTTGGAAAACCTTTTGATAAATGCATGCATCACCATGCATTC
TGCTGAAGCCAGGAAAGAGAGTAGAGGAGCTCATGCACGTGAAGATTTTA
CGAAAAGAGATGATGAGAACTGGATGAAGCACACTCTGGGATATTGGGAG
AATGAGAAGGTACGATTGGATTACAGACCAGTTCACATGAATACGCTAGA
CGATGAAATCGAGTCCTTCCCACCTAAAGCTCGTGTATATTGATCTATCT
GCTCTCCCCAAAAATAAGAAAAACTGGAGAAAGGAAGGAAGAGAGGGGGG
AATTCAATAAATTGTTGTAGCTACAGCATTTTGGCAAAATAATCATTGCA
TTGATCAGAATTAAACTTCTAATATTGCAAGGTTCTATCAATTTCAACCA
GAGTTTGAATTTTGTTCATGCTTAAGCGCGGGTAATAAGCTTTTGTGGTT
GTTGGACGGCNTGGGATAGGTGTTTAAACTCATTGTTAAATTAATAATAA
TATATTTTGGCTTTTG
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