CF417887
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 1.686e-58 Identity = 106/130 (81.54%), Postives = 113/130 (86.92%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390 MQRVMQNNAAVFRTQETLEEGC+LI KAWES+HDVK++DRSLIWN+D ACITMHSAEARKESRGAHAREDFTKRDDE WMKH+LGYWENEKVRL YRPVHMNTLD E+ESFPPKARVY Sbjct: 501 MQRVMQNNAAVFRTQETLEEGCKLITKAWESYHDVKISDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEQWMKHSLGYWENEKVRLAYRPVHMNTLDSEVESFPPKARVY 630
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.023e-55 Identity = 102/130 (78.46%), Postives = 112/130 (86.15%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390 MQR+MQNNAAVFRTQETLEEGCQLIDKAWESF DV++ DRS+IWN+D A ITMHSAEARKESRGAHAREDFTKR+D WMKHTLGYWE+EKVRLDYRPVHM+TLDDEI++FPPKARVY Sbjct: 505 MQRIMQNNAAVFRTQETLEEGCQLIDKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDFTKREDGEWMKHTLGYWEDEKVRLDYRPVHMDTLDDEIDTFPPKARVY 634
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 6.628e-55 Identity = 99/130 (76.15%), Postives = 108/130 (83.08%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390 MQRVMQNNAAVFRTQETLEEGC LIDK W+SF DVK+TDRS+IWN+D ACITMHSAEARKESRGAHAREDFTKRDD NWMKHTLGYWE V+L+YRPVHM TLDDE+++FPPK RVY Sbjct: 503 MQRVMQNNAAVFRTQETLEEGCDLIDKTWDSFGDVKVTDRSMIWNSDLIETMELENLLVNACITMHSAEARKESRGAHAREDFTKRDDANWMKHTLGYWEEGNVKLEYRPVHMKTLDDEVDTFPPKPRVY 632
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32 Identity = 75/134 (55.97%), Postives = 91/134 (67.91%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESF-HDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE--NEKVRLDYRPVHMNTLD-DEIESFPPKARVY 390 MQ++MQ NAAVFR + L+EG +LIDK S +D+K TDR++IWNTD A +TMHSAEARKESRGAHARED+ +RDD NWMKHTL Y + KV L+YRPV TLD E+E+ P RVY Sbjct: 493 MQKIMQRNAAVFRDGQVLKEGVELIDKCARSLINDLKTTDRTMIWNTDLIESLELQNLMTQAVLTMHSAEARKESRGAHAREDYKERDDANWMKHTLSYLDVNTGKVTLNYRPVVSETLDQSEMETIKPFKRVY 626
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32 Identity = 67/131 (51.15%), Postives = 91/131 (69.47%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390 MQR MQ++A+VFRTQE L+EG ++I + + D+K+ D+SLIWN+D A +T++SA ARKESRGAHARED+ R+D+ WM+HTL G E KV LDY+PV + TL DE+++ PP RVY Sbjct: 466 MQRTMQSHASVFRTQEVLDEGAEMISEIRSGYKDIKVNDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDKEWMQHTLSGVDEAGKVVLDYKPVTLTTLSDEVKAIPPAKRVY 596
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.756e-31 Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390 MQR MQ++A+VFRTQE L+EG +I + + D+K+ D+SLIWN+D A +T++SA ARKESRGAHARED+ R+DE+WMKHTL E KV LDY+PV + TL DE+ + PP RVY Sbjct: 466 MQRTMQSHASVFRTQEVLDEGAGMISEIRSGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDEDWMKHTLSSIDEAGKVVLDYKPVTLTTLTDEVTAVPPVKRVY 596
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31 Identity = 66/131 (50.38%), Postives = 88/131 (67.18%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 390 MQR MQ++A+VFRTQE L+EG +I + + D+K+ D+SLIWN+D A +T++SA ARKESRGAHARED+ R+D +WMKHTL E K+ +DY+PV + TL DEI + PP RVY Sbjct: 466 MQRTMQSHASVFRTQEVLDEGAGMISEIRNGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDGDWMKHTLSSIDEAGKIVIDYKPVTLTTLTDEISAIPPAKRVY 596
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICTY (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi GN=sdhA PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.259e-29 Identity = 62/131 (47.33%), Postives = 89/131 (67.94%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 390 MQR MQ++ +VFRTQE L+EG ++I + + D+K+ D+SLIWN+D A +T++SA ARKESRGAHARED+ R+D +W+KHTL ++ ++ LDY+PV + TL DEI + PP R+Y Sbjct: 466 MQRTMQSHVSVFRTQELLDEGARMISEIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDIDWIKHTLSSIDDSGQIILDYKPVTLTTLTDEISTIPPVKRIY 596
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.818e-28 Identity = 63/131 (48.09%), Postives = 86/131 (65.65%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 390 MQR MQ++ +VFRTQ+ L+EG +I + + D+K+ D+SLIWN+D A +T+ SA ARKESRGAHARED+ R+D +W+KHTL ++ KV LDY+PV + TL D I + PP RVY Sbjct: 466 MQRTMQSHVSVFRTQKLLDEGVGMISEIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVCSAAARKESRGAHAREDYPDRNDRDWIKHTLSSIDDSGKVVLDYKPVTLTTLTDAISAIPPVKRVY 596
BLAST of CF417887 vs. ExPASy Swiss-Prot
Match: DHSA_PARDE (Succinate dehydrogenase flavoprotein subunit OS=Paracoccus denitrificans GN=sdhA PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.428e-27 Identity = 67/136 (49.26%), Postives = 83/136 (61.03%), Query Frame = 1 Query: 1 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMN--TLDDE----IESFPPKARVY 390 MQR MQ +AAVFRT +TL EG + D+K+TDRSLIWN+D A T+ +AEARKESRGAHA ED+ +RDD NW KH+L + E V+L YRPVH+ T DE ++ PKARVY Sbjct: 465 MQRTMQADAAVFRTDKTLAEGVDKMRVIAGKLSDLKVTDRSLIWNSDLMETLELTNLMPNALATIVAAEARKESRGAHAHEDYPERDDANWRKHSLAWIEGNDVKLAYRPVHLEPLTRQDEGGIDLKKIAPKARVY 600 The following BLAST results are available for this feature:
BLAST of CF417887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417887 ID=CF417887; Name=CF417887; organism=Citrus sinensis; type=EST; length=666bpback to top |